Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   K6974_RS00935 Genome accession   NZ_CP082204
Coordinates   157064..157459 (+) Length   131 a.a.
NCBI ID   WP_222336992.1    Uniprot ID   A0A9X4MW46
Organism   Streptococcus suis strain FJSM5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 152064..162459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS00900 (K6974_00885) pepA 152456..153517 (-) 1062 WP_222336988.1 glutamyl aminopeptidase -
  K6974_RS00905 (K6974_00890) - 153649..153753 (+) 105 WP_125175873.1 type I toxin-antitoxin system Fst family toxin -
  K6974_RS00910 (K6974_00895) - 153953..154237 (+) 285 WP_002940015.1 DUF4651 domain-containing protein -
  K6974_RS00915 (K6974_00900) - 154234..154554 (+) 321 WP_002940018.1 thioredoxin family protein -
  K6974_RS00920 (K6974_00905) - 154599..155555 (+) 957 WP_222336989.1 DUF1002 domain-containing protein -
  K6974_RS00925 (K6974_00910) ytpR 155574..156197 (+) 624 WP_222336990.1 YtpR family tRNA-binding protein -
  K6974_RS00930 (K6974_00915) - 156230..157009 (-) 780 WP_222336991.1 DUF2785 domain-containing protein -
  K6974_RS00935 (K6974_00920) ssbA 157064..157459 (+) 396 WP_222336992.1 single-stranded DNA-binding protein Machinery gene
  K6974_RS00940 (K6974_00925) - 157578..157823 (-) 246 WP_024402275.1 hypothetical protein -
  K6974_RS00945 (K6974_00930) groES 158023..158304 (+) 282 WP_024409107.1 co-chaperone GroES -
  K6974_RS00950 (K6974_00935) groL 158316..159938 (+) 1623 WP_024418195.1 chaperonin GroEL -
  K6974_RS00955 (K6974_00940) rpsL 160170..160583 (+) 414 WP_024380262.1 30S ribosomal protein S12 -
  K6974_RS00960 (K6974_00945) rpsG 160600..161070 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14893.79 Da        Isoelectric Point: 5.0026

>NTDB_id=599975 K6974_RS00935 WP_222336992.1 157064..157459(+) (ssbA) [Streptococcus suis strain FJSM5]
MYNKIILIGRLTAQPELTQTPTGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNNGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=599975 K6974_RS00935 WP_222336992.1 157064..157459(+) (ssbA) [Streptococcus suis strain FJSM5]
ATGTATAATAAAATAATTTTAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACACCAACTGGCAAAAATTTGAC
TCGTGTAACTGTCGCAGTCAATCGCCGATTTAAGACAGAAAATGGTGAGCGTGAAGCAGATTTTCTCAATGTTATTTTCT
GGGGCAAACTGGCGGAGACACTTGTTTCTTATGGCAGCAAGGGTAGTCTGATTTCGATTGATGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACTGAAATCTTAGGACAATCCTTCCAGTTGCTCGAAAGCCGAGCTCA
ACGTGCCATGCGTGAAAACAATAATGGCGATGACCTAGCTGACTTGGTTTTAGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae Rx1

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae D39

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.992

100

0.71
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374