Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   K6972_RS01100 Genome accession   NZ_CP082203
Coordinates   171519..171914 (+) Length   131 a.a.
NCBI ID   WP_141597161.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 166519..176914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS01070 (K6972_01070) pepA 167138..168199 (-) 1062 WP_170239956.1 glutamyl aminopeptidase -
  K6972_RS01075 (K6972_01075) - 168412..168696 (+) 285 WP_105150770.1 DUF4651 domain-containing protein -
  K6972_RS01080 (K6972_01080) - 168693..169013 (+) 321 WP_222812630.1 thioredoxin family protein -
  K6972_RS01085 (K6972_01085) - 169057..170013 (+) 957 WP_222812631.1 DUF1002 domain-containing protein -
  K6972_RS01090 (K6972_01090) ytpR 170032..170655 (+) 624 WP_222812633.1 YtpR family tRNA-binding protein -
  K6972_RS01095 (K6972_01095) - 170688..171464 (-) 777 WP_222812634.1 DUF2785 domain-containing protein -
  K6972_RS01100 (K6972_01100) ssbA 171519..171914 (+) 396 WP_141597161.1 single-stranded DNA-binding protein Machinery gene
  K6972_RS10520 - 172300..172425 (-) 126 WP_261984179.1 hypothetical protein -
  K6972_RS01105 (K6972_01105) groES 172623..172904 (+) 282 WP_014637330.1 co-chaperone GroES -
  K6972_RS01110 (K6972_01110) groL 172916..174538 (+) 1623 WP_024393522.1 chaperonin GroEL -
  K6972_RS01115 (K6972_01115) rpsL 174769..175182 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  K6972_RS01120 (K6972_01120) rpsG 175199..175669 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14882.76 Da        Isoelectric Point: 5.0026

>NTDB_id=599922 K6972_RS01100 WP_141597161.1 171519..171914(+) (ssbA) [Streptococcus suis strain NJ3]
MYNKTILIGRLTAQPELTQTPTGKNLTRVTIAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGNTFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=599922 K6972_RS01100 WP_141597161.1 171519..171914(+) (ssbA) [Streptococcus suis strain NJ3]
ATGTATAATAAAACAATTTTAATTGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACACCAACTGGCAAAAATTTGAC
TCGTGTAACCATTGCAGTTAATAGACGATTTAAGACAGAAAATGGTGAACGTGAGGCAGATTTTCTCAATGTTATTTTCT
GGGGAAAACTGGCGGAAACACTTGTTTCCTATGGTAGCAAGGGCAGTCTGATTTCTATTGACGGTGAGTTGCGTACCCGT
AAATACGAAAAAGACGGCAGCAACCACTATGTGACGGAAATCTTGGGCAATACCTTCCAGTTGCTCGAAAGCCGCGCCCA
ACGTGCCATGCGAGAAAATAATACTGGCGATGACCTAGCTGACTTGGTCTTGGAAGAGGAAGAATTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae TIGR4

72.519

100

0.725
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae D39

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.283

80.916

0.366