Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   K6976_RS00845 Genome accession   NZ_CP082202
Coordinates   135343..135738 (+) Length   131 a.a.
NCBI ID   WP_141597161.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 130343..140738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS00815 (K6976_00815) pepA 130619..131680 (-) 1062 WP_222759627.1 glutamyl aminopeptidase -
  K6976_RS00820 (K6976_00820) - 132234..132518 (+) 285 WP_002940015.1 DUF4651 domain-containing protein -
  K6976_RS00825 (K6976_00825) - 132515..132835 (+) 321 WP_222759629.1 thioredoxin family protein -
  K6976_RS00830 (K6976_00830) - 132881..133837 (+) 957 WP_222759631.1 DUF1002 domain-containing protein -
  K6976_RS00835 (K6976_00835) ytpR 133856..134479 (+) 624 WP_222759633.1 YtpR family tRNA-binding protein -
  K6976_RS00840 (K6976_00840) - 134512..135288 (-) 777 WP_222759634.1 DUF2785 domain-containing protein -
  K6976_RS00845 (K6976_00845) ssbA 135343..135738 (+) 396 WP_141597161.1 single-stranded DNA-binding protein Machinery gene
  K6976_RS10860 - 136124..136249 (-) 126 WP_261984179.1 hypothetical protein -
  K6976_RS00850 (K6976_00850) groES 136447..136728 (+) 282 WP_014637330.1 co-chaperone GroES -
  K6976_RS00855 (K6976_00855) groL 136740..138362 (+) 1623 WP_024393522.1 chaperonin GroEL -
  K6976_RS00860 (K6976_00860) rpsL 138594..139007 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  K6976_RS00865 (K6976_00865) rpsG 139024..139494 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14882.76 Da        Isoelectric Point: 5.0026

>NTDB_id=599868 K6976_RS00845 WP_141597161.1 135343..135738(+) (ssbA) [Streptococcus suis strain SS389]
MYNKTILIGRLTAQPELTQTPTGKNLTRVTIAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGNTFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=599868 K6976_RS00845 WP_141597161.1 135343..135738(+) (ssbA) [Streptococcus suis strain SS389]
ATGTATAATAAAACAATTTTAATTGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACACCAACTGGCAAAAATTTGAC
TCGTGTAACCATTGCAGTTAATAGACGATTTAAGACAGAAAATGGTGAACGTGAGGCAGATTTTCTCAATGTTATTTTCT
GGGGAAAACTGGCGGAAACACTTGTTTCCTATGGTAGCAAGGGCAGTCTGATTTCTATTGACGGTGAGTTGCGTACCCGT
AAATACGAAAAAGACGGCAGCAACCACTATGTGACGGAAATCTTGGGCAATACCTTCCAGTTGCTCGAAAGCCGCGCCCA
ACGTGCCATGCGAGAAAATAATACTGGCGATGACCTAGCTGACTTGGTCTTGGAAGAGGAAGAATTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae TIGR4

72.519

100

0.725
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae D39

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.283

80.916

0.366