Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   L897_RS00720 Genome accession   NC_021807
Coordinates   113505..113900 (+) Length   131 a.a.
NCBI ID   WP_003053955.1    Uniprot ID   A0AAE9R0G1
Organism   Streptococcus pyogenes HSC5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 108505..118900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L897_RS09080 (L897_00720) - 109371..109679 (+) 309 Protein_92 hypothetical protein -
  L897_RS00695 (L897_00725) proC 109762..110532 (-) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -
  L897_RS00700 (L897_00730) pepA 110580..111647 (-) 1068 WP_020833202.1 glutamyl aminopeptidase -
  L897_RS00705 (L897_00740) - 112112..112396 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  L897_RS00710 (L897_00745) - 112393..112710 (+) 318 WP_020833204.1 thioredoxin family protein -
  L897_RS00715 (L897_00750) ytpR 112728..113354 (+) 627 WP_020833205.1 YtpR family tRNA-binding protein -
  L897_RS00720 (L897_00755) ssbA 113505..113900 (+) 396 WP_003053955.1 single-stranded DNA-binding protein Machinery gene
  L897_RS00730 (L897_00765) - 114160..114801 (-) 642 WP_042361464.1 deoxynucleoside kinase -
  L897_RS00735 (L897_00770) dusB 114821..115798 (-) 978 WP_042361465.1 tRNA dihydrouridine synthase DusB -
  L897_RS00740 (L897_00775) hslO 115785..116657 (-) 873 WP_020833209.1 Hsp33 family molecular chaperone HslO -
  L897_RS00745 (L897_00780) rofA 116804..118297 (-) 1494 WP_020833210.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14787.96 Da        Isoelectric Point: 8.0157

>NTDB_id=59909 L897_RS00720 WP_003053955.1 113505..113900(+) (ssbA) [Streptococcus pyogenes HSC5]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=59909 L897_RS00720 WP_003053955.1 113505..113900(+) (ssbA) [Streptococcus pyogenes HSC5]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCGGGAGAGCGAGAAGCGGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGAACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
ACGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment