Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   K6J69_RS03075 Genome accession   NZ_AP018777
Coordinates   617629..619821 (-) Length   730 a.a.
NCBI ID   WP_061724200.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-6 isolate 13H31     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 612629..624821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J69_RS03050 (CHBNIII6_05780) relA 612924..615155 (+) 2232 WP_110430754.1 GTP diphosphokinase -
  K6J69_RS03055 (CHBNIII6_05790) - 615170..615526 (+) 357 WP_110430753.1 diacylglycerol kinase -
  K6J69_RS03060 (CHBNIII6_05800) mog 615609..616202 (+) 594 WP_110430752.1 molybdopterin adenylyltransferase -
  K6J69_RS03065 (CHBNIII6_05810) glnB 616204..616542 (+) 339 WP_005627040.1 nitrogen regulatory protein P-II -
  K6J69_RS03070 (CHBNIII6_05820) - 616542..617588 (+) 1047 WP_110430751.1 AI-2E family transporter -
  K6J69_RS03075 (CHBNIII6_05830) priA 617629..619821 (-) 2193 WP_061724200.1 primosomal protein N' Machinery gene
  K6J69_RS03080 (CHBNIII6_05840) trmB 619906..620646 (+) 741 WP_005662679.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  K6J69_RS03085 (CHBNIII6_05850) - 620731..621075 (+) 345 WP_014550458.1 YggL family protein -
  K6J69_RS03090 (CHBNIII6_05860) napF 621282..621812 (+) 531 WP_005659948.1 ferredoxin-type protein NapF -
  K6J69_RS03095 (CHBNIII6_05870) - 621805..622086 (+) 282 WP_014550457.1 chaperone NapD -
  K6J69_RS03100 (CHBNIII6_05880) napA 622123..624606 (+) 2484 WP_110430750.1 nitrate reductase catalytic subunit NapA -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 82317.55 Da        Isoelectric Point: 9.3186

>NTDB_id=59909 K6J69_RS03075 WP_061724200.1 617629..619821(-) (priA) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
MKIVRVALAVPLPRLFDYFVPDDVSLQIGMRVLVPFGTQKRVAIVADFPTKSDVPEDKLKAILQPLDLAPLFTPIYWDWL
HWAANYYQAGLGDVLFQALPVKLRNGESAVKNDRTFWRITDAGKNALKQGELKRSKKQAEALQYLSETDLEKGNNNFSSA
IWSALKAKGFIEEITIHTNPLSWQQRLGNNPIVNAENRLTLNKQQALAFSQLLFHSGFNVWLLDGVTGSGKTEIYLQYIE
EILKSGKQVLVLVPEIGLTPQTVQRFKARFNVEIDVLHSNLTDTQRLYVWDRARSGQSAIVIGTRSALFTQFSNLGAIIL
DEEHDSSYKQQDSWRYHARDLAIVLAQKLNIAVLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVIDLKNQNI
QNGLSKPLLERMKAHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPYTYHQHQNVLRCHHCGAQKTIPRQCGDC
GSTHLVTTGLGTEQLEETLKMLFPHYSVARIDRDSTARKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNV
DSALFSLDFRAEERLAQLYIQVAGRAGRADKQGEVVLQTHYPDHPLLTALLANGYQAFAKETLQLRHSMGLPPFTFQALF
KAQARHSDLAENCLSQIADFFQSKQITGLQMLGPMPAPFSKKAGQYRWQLLLQHPSRMTLQKALREYQQAELEKNSQVRL
ILDVDPQDLS

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=59909 K6J69_RS03075 WP_061724200.1 617629..619821(-) (priA) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
ATGAAAATTGTCCGAGTGGCACTGGCTGTGCCGCTTCCTCGTTTATTTGATTATTTCGTCCCCGATGATGTTTCATTACA
AATCGGTATGCGTGTTCTTGTGCCTTTTGGCACCCAAAAACGTGTCGCCATTGTGGCTGATTTTCCGACAAAATCGGACG
TGCCAGAGGATAAACTCAAGGCTATTCTTCAACCATTGGATTTAGCCCCACTTTTTACGCCCATTTATTGGGATTGGCTT
CATTGGGCAGCAAATTATTATCAAGCGGGATTAGGCGATGTGTTATTTCAAGCCTTGCCTGTGAAATTGCGTAACGGCGA
AAGTGCGGTAAAAAATGACCGCACTTTTTGGCGAATTACGGATGCGGGGAAAAATGCCCTTAAACAAGGCGAATTAAAAC
GCTCGAAAAAGCAAGCTGAAGCCCTACAATACTTATCTGAAACTGATCTTGAAAAAGGCAATAATAATTTTTCCTCTGCC
ATTTGGTCTGCCTTAAAAGCCAAAGGGTTTATTGAAGAAATTACTATCCACACAAATCCCCTAAGCTGGCAACAAAGATT
AGGCAATAACCCAATAGTCAATGCTGAAAATCGTTTAACCTTAAATAAGCAGCAAGCCTTAGCCTTCAGCCAACTGCTCT
TCCATTCTGGTTTCAATGTATGGCTGCTCGATGGCGTGACTGGTTCAGGTAAAACAGAAATTTATCTGCAATATATTGAA
GAAATTTTAAAATCGGGTAAGCAAGTATTAGTGCTTGTACCCGAAATCGGGCTAACACCTCAAACGGTGCAACGTTTCAA
AGCACGTTTCAACGTAGAAATTGATGTACTGCATTCTAATTTAACCGATACGCAACGGCTTTATGTATGGGATCGCGCCC
GCTCTGGACAAAGTGCTATTGTGATTGGTACGAGATCGGCATTGTTCACGCAATTTTCTAATCTTGGTGCAATTATTTTG
GACGAGGAACACGATTCGTCTTACAAACAACAAGACAGTTGGCGTTACCATGCGCGAGACTTGGCGATTGTGCTGGCTCA
AAAACTAAATATTGCGGTATTAATGGGCTCCGCCACGCCAAGTTTAGAAAGTATTAATAATGTACAAAACGGTAAATACC
AACATTTAGTTTTATCAAAAAGAGCGGGGAATTCTACCGCACTTCGTCATTTCGTTATTGATTTAAAAAATCAAAACATA
CAAAACGGACTTTCAAAACCCTTATTGGAACGGATGAAAGCTCACCTAGAAAAAGGCAATCAAGTGTTGCTTTTCTTAAA
TCGTCGTGGCTTTGCCCCCGTATTGCTTTGCCATGAATGTGGTTGGATCGCACAATGCCCTCATTGTGAAAAACCTTATA
CCTATCATCAGCATCAAAATGTATTGCGTTGTCATCATTGTGGCGCGCAAAAAACTATTCCTCGCCAATGTGGCGATTGC
GGTTCTACCCATTTAGTTACTACTGGTCTCGGCACAGAACAATTAGAAGAAACCTTGAAAATGCTATTTCCTCATTATTC
TGTAGCGCGAATCGACCGCGATAGCACTGCGCGTAAAGGAAAATTGGAAGGTTATTTAGAAGATATTCAACAAGGCAAAA
GCCAAATTTTGATTGGCACACAAATGCTCGCGAAAGGACATCATTTCCCGAATGTTACTCTCGTTGCCTTAGTGAATGTA
GATAGTGCATTATTTTCACTGGATTTTCGTGCAGAAGAACGTTTAGCTCAACTTTATATTCAAGTTGCTGGACGTGCAGG
ACGTGCCGATAAACAAGGTGAAGTTGTGCTACAAACACATTATCCAGATCATCCTTTGCTTACCGCTTTATTGGCAAATG
GCTACCAAGCTTTTGCAAAAGAAACCTTACAATTACGCCATTCAATGGGATTGCCGCCTTTTACTTTTCAGGCGTTATTC
AAAGCACAGGCTCGACATTCTGATCTTGCAGAAAATTGCTTAAGCCAAATTGCAGATTTTTTTCAATCGAAGCAAATTAC
GGGATTACAAATGCTTGGCCCAATGCCTGCACCGTTCAGCAAAAAAGCGGGGCAATATCGCTGGCAGTTATTATTGCAGC
ATCCATCAAGAATGACGTTGCAAAAAGCATTAAGAGAATATCAACAAGCCGAACTAGAAAAAAACAGCCAAGTGCGGTTA
ATTTTGGACGTCGATCCGCAAGACTTATCATAA

Domains

Predicted by InterProScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-100)

DEAD/DEAH box helicase (DEAD)

(204-366)

Helicase conserved C-terminal domain (Helicase_C)

(505-589)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(446-471)

Primosomal protein N C-terminal domain (PriA_C)

(633-726)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

44.489

100

0.453

Multiple sequence alignment