Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K5R88_RS16480 Genome accession   NZ_CP081943
Coordinates   3635957..3637174 (+) Length   405 a.a.
NCBI ID   WP_192227988.1    Uniprot ID   -
Organism   Pseudomonas sp. MM213     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3630957..3642174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5R88_RS16460 (K5R88_16355) - 3632340..3632636 (+) 297 WP_008033199.1 DUF2845 domain-containing protein -
  K5R88_RS16465 (K5R88_16360) - 3632931..3633284 (-) 354 WP_008042835.1 BON domain-containing protein -
  K5R88_RS16470 (K5R88_16365) - 3633612..3634028 (-) 417 WP_008033203.1 pilin -
  K5R88_RS16475 (K5R88_16370) pilB 3634254..3635954 (+) 1701 WP_223437600.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K5R88_RS16480 (K5R88_16375) pilC 3635957..3637174 (+) 1218 WP_192227988.1 type II secretion system F family protein Machinery gene
  K5R88_RS16485 (K5R88_16380) pilD 3637176..3638048 (+) 873 WP_192419974.1 A24 family peptidase Machinery gene
  K5R88_RS16490 (K5R88_16385) coaE 3638045..3638668 (+) 624 WP_008033209.1 dephospho-CoA kinase -
  K5R88_RS16495 (K5R88_16390) yacG 3638665..3638865 (+) 201 WP_008033210.1 DNA gyrase inhibitor YacG -
  K5R88_RS16500 (K5R88_16395) - 3638874..3639089 (-) 216 WP_008033212.1 hypothetical protein -
  K5R88_RS16505 (K5R88_16400) - 3639154..3639843 (-) 690 WP_192227990.1 energy-coupling factor ABC transporter permease -
  K5R88_RS16510 (K5R88_16405) - 3641059..3641298 (+) 240 WP_008028718.1 DUF2790 domain-containing protein -
  K5R88_RS16515 (K5R88_16410) - 3641308..3641955 (-) 648 WP_008028719.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44195.07 Da        Isoelectric Point: 9.9923

>NTDB_id=598585 K5R88_RS16480 WP_192227988.1 3635957..3637174(+) (pilC) [Pseudomonas sp. MM213]
MAVKAAKISVYAWEGTDKKGTKITGELSAQNPALIKAQLRKQGINPGKVRKKSASFFSLGQRIKANDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAMTYPLAVVFVAIIVTGILLVKVVPQFESVFKGFGAQLPAFTVMVIGLSQFMQDWWWLMLGVLIAAIFGVR
HAFKTSQGFRDRTDTWLLKLPLIGALMYKSAVARYARTLSTTFAAGVPLVEALESVAGATGNIVFKRAVLRIKQDVSTGM
QLNFSMRTAGVFPNMAIQMTAIGEESGALDDMLDKVASFYEAEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGNAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=598585 K5R88_RS16480 WP_192227988.1 3635957..3637174(+) (pilC) [Pseudomonas sp. MM213]
ATGGCGGTCAAAGCAGCAAAAATCAGTGTGTACGCCTGGGAAGGCACCGACAAAAAAGGTACGAAAATAACCGGCGAACT
CAGCGCTCAGAACCCGGCGCTGATCAAGGCGCAACTGCGCAAGCAAGGCATCAACCCCGGCAAGGTGCGCAAGAAATCCG
CCTCGTTTTTCAGCCTCGGCCAACGCATCAAGGCGAATGACATTGCCCTGTTCACCCGGCAGATGGCGACCATGATGAAA
GCCGGCGTACCGCTGTTGCAATCGTTCGACATCATCGGCGAAGGCTTCGAAAACCCGGCCATGCGCAAACTGGTGGACGA
GGTGAAACAGGAAGTCGCGGCGGGTAACAGCTTCGCGGCAGCCCTGCGCAAAAAGCCGCAGTATTTTGATGAGCTCTACT
GCAATCTGGTGGATGCCGGCGAACAGGCCGGCGCGCTGGACACCCTGTTGGAGCGGGTCGCGACCTACAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAAGCCATGACTTATCCGCTGGCGGTGGTGTTCGTCGCGATCATCGTCACCGGGAT
TCTGCTGGTCAAGGTGGTGCCGCAGTTCGAGTCGGTGTTCAAAGGTTTTGGTGCGCAACTGCCGGCGTTCACGGTGATGG
TCATCGGTCTGTCGCAGTTCATGCAGGATTGGTGGTGGCTGATGCTTGGCGTGCTGATCGCGGCGATATTCGGTGTGCGC
CACGCCTTCAAGACATCGCAAGGCTTTCGGGACCGGACAGACACCTGGCTGCTGAAACTGCCGTTGATTGGCGCATTGAT
GTACAAGTCCGCCGTGGCCCGTTACGCCCGTACGCTGTCGACCACTTTCGCCGCGGGTGTACCGCTGGTCGAGGCGCTGG
AGTCAGTGGCGGGCGCGACCGGCAACATCGTGTTCAAGCGGGCGGTGCTGCGTATCAAGCAGGACGTTTCGACGGGGATG
CAGCTGAATTTCTCCATGCGCACCGCCGGCGTCTTTCCGAACATGGCGATCCAGATGACGGCCATTGGCGAAGAGTCGGG
CGCACTGGACGACATGCTCGACAAGGTCGCCAGTTTCTATGAGGCGGAAGTCGACAATATGGTCGACAATCTCACCAGCC
TGATGGAGCCATTCATCATGGTGGTGCTGGGTGTTATCGTCGGCGGCCTGGTGGTTGCGATGTACCTGCCCATTTTCCAA
CTCGGCAATGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

71.852

100

0.719
  pilC Acinetobacter baylyi ADP1

59.804

100

0.602
  pilC Acinetobacter baumannii D1279779

58.824

100

0.593
  pilC Legionella pneumophila strain ERS1305867

53.535

97.778

0.523
  pilG Neisseria gonorrhoeae MS11

42.928

99.506

0.427
  pilC Vibrio cholerae strain A1552

43.878

96.79

0.425
  pilG Neisseria meningitidis 44/76-A

42.432

99.506

0.422
  pilC Vibrio campbellii strain DS40M4

41.542

99.259

0.412
  pilC Thermus thermophilus HB27

38.404

99.012

0.38