Detailed information NTG0598586

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K5R88_RS16485
• Genome accession: NZ_CP081943
• Coordinates: 3637176..3638048 (+)
• Length: 290 a.a.
• NCBI ID: WP_192419974.1
• Uniprot ID: -
• Organism: Pseudomonas sp. MM213
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3632176..3643048

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5R88_RS16460 (K5R88_16355)	-	3632340..3632636 (+)	297	WP_008033199.1	DUF2845 domain-containing protein	-
K5R88_RS16465 (K5R88_16360)	-	3632931..3633284 (-)	354	WP_008042835.1	BON domain-containing protein	-
K5R88_RS16470 (K5R88_16365)	-	3633612..3634028 (-)	417	WP_008033203.1	pilin	-
K5R88_RS16475 (K5R88_16370)	pilB	3634254..3635954 (+)	1701	WP_223437600.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K5R88_RS16480 (K5R88_16375)	pilC	3635957..3637174 (+)	1218	WP_192227988.1	type II secretion system F family protein	Machinery gene
K5R88_RS16485 (K5R88_16380)	pilD	3637176..3638048 (+)	873	WP_192419974.1	A24 family peptidase	Machinery gene
K5R88_RS16490 (K5R88_16385)	coaE	3638045..3638668 (+)	624	WP_008033209.1	dephospho-CoA kinase	-
K5R88_RS16495 (K5R88_16390)	yacG	3638665..3638865 (+)	201	WP_008033210.1	DNA gyrase inhibitor YacG	-
K5R88_RS16500 (K5R88_16395)	-	3638874..3639089 (-)	216	WP_008033212.1	hypothetical protein	-
K5R88_RS16505 (K5R88_16400)	-	3639154..3639843 (-)	690	WP_192227990.1	energy-coupling factor ABC transporter permease	-
K5R88_RS16510 (K5R88_16405)	-	3641059..3641298 (+)	240	WP_008028718.1	DUF2790 domain-containing protein	-
K5R88_RS16515 (K5R88_16410)	-	3641308..3641955 (-)	648	WP_008028719.1	methyl-accepting chemotaxis protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32072.45 Da
• Isoelectric Point: 8.0590

>NTDB_id=598586 K5R88_RS16485 WP_192419974.1 3637176..3638048(+) (pilD) [Pseudomonas sp. MM213]
MPLNEILTVYPLAFVVIALLVGLLVGSFLNVVIWRLPKMLEREWQLQARDILGLPGETPPATYNLMLPHSECPHCGHRIR
AWENIPLLSYVFLRGRCSSCAAPISKRYPLTELACGLLSAFIAWHFGFGWQAGMVLVLSWGLLAMSLIDAEHQLLPDVLV
LPLMWLGLVVNSFGLFVPLHEALWGAIAGYMALWSVFWLFKLITGKEGIGHGDFKLLAMLGAWGGWQILPLTILLSSLVG
AIIGMILLSLRNAKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=598586 K5R88_RS16485 WP_192419974.1 3637176..3638048(+) (pilD) [Pseudomonas sp. MM213]
ATGCCTTTGAACGAAATCCTGACCGTGTACCCGCTGGCGTTTGTCGTCATTGCACTGCTGGTCGGCTTGCTGGTCGGCAG
CTTCCTCAATGTGGTGATCTGGCGCCTGCCGAAAATGCTCGAGCGTGAGTGGCAATTGCAGGCCCGGGACATTCTCGGTT
TGCCTGGCGAAACACCGCCTGCGACCTACAACCTGATGCTGCCCCACTCCGAGTGCCCGCATTGTGGGCACCGAATTCGC
GCCTGGGAAAACATCCCGCTGCTAAGTTATGTGTTTTTACGTGGACGATGCTCAAGCTGCGCAGCGCCCATCAGCAAACG
CTACCCCTTGACCGAACTGGCCTGCGGCCTGCTGTCGGCGTTCATTGCCTGGCATTTCGGTTTCGGCTGGCAAGCCGGGA
TGGTGCTGGTCCTGAGCTGGGGCCTGTTGGCCATGAGCCTGATCGACGCCGAGCATCAACTGTTGCCGGATGTGCTGGTG
CTACCGCTGATGTGGCTGGGACTGGTCGTCAACAGCTTCGGATTGTTCGTGCCGTTGCACGAGGCGCTGTGGGGCGCAAT
TGCGGGCTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGAAGGCATCGGCCACGGCGATT
TCAAGCTGTTGGCCATGCTGGGCGCCTGGGGCGGCTGGCAGATTTTGCCGCTGACCATTCTGTTGTCGTCCCTGGTGGGC
GCGATTATCGGCATGATTTTGCTGAGCCTGCGCAATGCGAAAACCTCGACCCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.255	97.241	0.528
pilD	Vibrio campbellii strain DS40M4	51.773	97.241	0.503
pilD	Acinetobacter baumannii D1279779	50.365	94.483	0.476
pilD	Acinetobacter nosocomialis M2	50.365	94.483	0.476
pilD	Neisseria gonorrhoeae MS11	48.148	93.103	0.448