Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   K5J94_RS00955 Genome accession   NZ_CP081502
Coordinates   196006..196401 (-) Length   131 a.a.
NCBI ID   WP_159544735.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 191006..201401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS00935 - 191454..192974 (+) 1521 WP_221913210.1 helix-turn-helix domain-containing protein -
  K5J94_RS00940 hslO 193078..193950 (+) 873 WP_221913212.1 Hsp33 family molecular chaperone HslO -
  K5J94_RS00945 dusB 193937..194914 (+) 978 WP_159563941.1 tRNA dihydrouridine synthase DusB -
  K5J94_RS00950 - 194931..195572 (+) 642 WP_159563942.1 deoxynucleoside kinase -
  K5J94_RS00955 ssbA 196006..196401 (-) 396 WP_159544735.1 single-stranded DNA-binding protein Machinery gene
  K5J94_RS00960 ytpR 196597..197223 (-) 627 WP_159560352.1 YtpR family tRNA-binding protein -
  K5J94_RS00965 - 197220..197558 (-) 339 WP_159544731.1 thioredoxin family protein -
  K5J94_RS00970 - 197528..197839 (-) 312 WP_221913214.1 DUF4651 domain-containing protein -
  K5J94_RS00975 pepA 198053..199120 (+) 1068 WP_159563944.1 glutamyl aminopeptidase -
  K5J94_RS00980 proC 199132..199932 (+) 801 WP_221913216.1 pyrroline-5-carboxylate reductase -
  K5J94_RS00985 - 200338..201000 (-) 663 WP_221913218.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14844.92 Da        Isoelectric Point: 7.9836

>NTDB_id=597032 K5J94_RS00955 WP_159544735.1 196006..196401(-) (ssbA) [Streptococcus halichoeri strain Shali_VAS-CPH]
MYNRVILIGRAVATPELIRTPNGKAVCRLSLAVNRRYRNADGDRQVDFINLVLWGKLAENLVSYGNKGSLLSVEGELRTR
KYDKDGQTVYFTEVLGQSFQLLESKAQRAMRANHFNPDLADLEVEEAELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=597032 K5J94_RS00955 WP_159544735.1 196006..196401(-) (ssbA) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGTATAATCGTGTCATACTAATAGGAAGGGCAGTCGCCACTCCAGAATTAATCAGAACCCCAAATGGCAAAGCAGTCTG
CCGTTTATCACTGGCTGTTAATCGTCGTTATCGCAATGCTGATGGTGACAGACAGGTTGATTTTATTAATCTGGTCTTAT
GGGGAAAGCTAGCGGAAAACCTGGTTTCCTACGGTAATAAGGGCAGTTTATTATCGGTAGAAGGAGAGCTGCGCACACGC
AAATATGATAAAGACGGCCAGACGGTCTATTTCACTGAGGTTTTAGGCCAGTCCTTTCAACTCTTAGAAAGTAAGGCCCA
ACGGGCTATGCGTGCAAATCACTTCAATCCTGACTTAGCAGACCTAGAAGTAGAAGAAGCTGAGCTCCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

67.176

100

0.672
  ssbB Streptococcus sobrinus strain NIDR 6715-7

64.122

100

0.641
  ssbB/cilA Streptococcus mitis NCTC 12261

63.359

100

0.634
  ssbB/cilA Streptococcus pneumoniae TIGR4

63.359

100

0.634
  ssbB/cilA Streptococcus pneumoniae Rx1

62.595

100

0.626
  ssbB/cilA Streptococcus pneumoniae D39

62.595

100

0.626
  ssbB/cilA Streptococcus pneumoniae R6

62.595

100

0.626
  ssbB/cilA Streptococcus mitis SK321

62.595

100

0.626
  ssbB Lactococcus lactis subsp. cremoris KW2

56.364

83.969

0.473
  ssb Latilactobacillus sakei subsp. sakei 23K

49.107

85.496

0.42
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412