Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   M9A05_RS14100 Genome accession   NZ_CP097575
Coordinates   3053737..3054825 (-) Length   362 a.a.
NCBI ID   WP_003123764.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain UNC_PaerCF25     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3048737..3059825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9A05_RS14075 (M9A05_14075) - 3049065..3050051 (-) 987 WP_250177762.1 hypothetical protein -
  M9A05_RS14080 (M9A05_14080) aroE 3050162..3050986 (-) 825 WP_003111201.1 shikimate dehydrogenase -
  M9A05_RS14085 (M9A05_14085) hemF 3051044..3051961 (-) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  M9A05_RS14090 (M9A05_14090) - 3052152..3053129 (+) 978 WP_250177763.1 NADPH:quinone reductase -
  M9A05_RS14095 (M9A05_14095) - 3053139..3053696 (-) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  M9A05_RS14100 (M9A05_14100) dprA 3053737..3054825 (-) 1089 WP_003123764.1 DNA-processing protein DprA Machinery gene
  M9A05_RS14105 (M9A05_14105) tsaP 3054960..3055985 (-) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  M9A05_RS14110 (M9A05_14110) def 3056124..3056630 (+) 507 WP_003107059.1 peptide deformylase -
  M9A05_RS14115 (M9A05_14115) fmt 3056685..3057629 (+) 945 WP_003123763.1 methionyl-tRNA formyltransferase -
  M9A05_RS14120 (M9A05_14120) rsmB 3057626..3058930 (+) 1305 WP_003458403.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37673.17 Da        Isoelectric Point: 7.0742

>NTDB_id=595609 M9A05_RS14100 WP_003123764.1 3053737..3054825(-) (dprA) [Pseudomonas aeruginosa strain UNC_PaerCF25]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=595609 M9A05_RS14100 WP_003123764.1 3053737..3054825(-) (dprA) [Pseudomonas aeruginosa strain UNC_PaerCF25]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTCCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGTGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCACCCCGG
CGCACGTGGCTGCCACCAGCTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAACCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

43.514

100

0.445
  dprA Vibrio cholerae strain A1552

43.048

100

0.445
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

43.048

100

0.445
  dprA Legionella pneumophila strain ERS1305867

43.38

98.066

0.425
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.254

98.066

0.414
  dprA Acinetobacter baumannii D1279779

37.845

100

0.378
  dprA Neisseria gonorrhoeae strain FA1090

44.554

83.702

0.373
  dprA Acinetobacter baumannii strain A118

38.177

96.961

0.37
  dprA Neisseria meningitidis MC58

46.048

80.387

0.37
  dprA Neisseria meningitidis strain C311

46.048

80.387

0.37
  dprA Glaesserella parasuis strain SC1401

46.853

79.006

0.37
  dprA Neisseria gonorrhoeae MS11

44.224

83.702

0.37