Detailed information NTG0595609

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: K3819_RS24865
• Genome accession: NZ_CP081200
• Coordinates: 5482578..5483924 (+)
• Length: 448 a.a.
• NCBI ID: WP_221398122.1
• Uniprot ID: -
• Organism: Pseudomonas sp. 3-2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5477578..5488924

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K3819_RS24840 (K3819_24840)	pgeF	5477793..5478515 (-)	723	WP_085612624.1	peptidoglycan editing factor PgeF	-
K3819_RS24845 (K3819_24845)	rluD	5478512..5479474 (-)	963	WP_221398121.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
K3819_RS24850 (K3819_24850)	-	5479627..5480643 (+)	1017	WP_007959566.1	outer membrane protein assembly factor BamD	-
K3819_RS24855 (K3819_24855)	-	5480769..5481002 (+)	234	WP_039771683.1	PP0621 family protein	-
K3819_RS24860 (K3819_24860)	pilS	5480992..5482581 (+)	1590	WP_221399732.1	ATP-binding protein	Regulator
K3819_RS24865 (K3819_24865)	pilR	5482578..5483924 (+)	1347	WP_221398122.1	sigma-54 dependent transcriptional regulator	Regulator
K3819_RS24870 (K3819_24870)	thiO	5484082..5485182 (-)	1101	WP_221398123.1	glycine oxidase ThiO	-
K3819_RS24875 (K3819_24875)	-	5485240..5485641 (-)	402	WP_221398124.1	type IV pilin protein	-
K3819_RS24880 (K3819_24880)	-	5485657..5488749 (-)	3093	WP_221398125.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50034.29 Da
• Isoelectric Point: 6.6655

>NTDB_id=595609 K3819_RS24865 WP_221398122.1 5482578..5483924(+) (pilR) [Pseudomonas sp. 3-2]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQALLHRETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGSALRMPAPGNVCTSIDRRLLGDSPPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVA
DLPLPMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERREDIEALA
GHMLKRLANGTGQPAARLHPHALEALKNYRFPGNVRELENVLERAHTLCENRTIETDDLRLSEGNGAAEGGVADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=595609 K3819_RS24865 WP_221398122.1 5482578..5483924(+) (pilR) [Pseudomonas sp. 3-2]
TTGAATACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAATCTCGCAGAGGCCCAGGCGCTGCTGCACCGCGAGACCTTCGATCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGCCTGGAACTGGTGCAGCACATTCAGCAACGTTATCCCCAACTGCCG
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACGGCGATCAACGCCCTCAAGGCCGGGGCTTTCGACTTCCTGACCAA
ACCCGTGGATCTGACACGCCTGCGCGAGCTGGTCGGCTCGGCGTTGCGCATGCCGGCGCCGGGCAATGTCTGCACTTCGA
TCGACCGGCGGCTGCTCGGCGATTCACCGCCGATGCGCAACCTGCGCAAACAGATCGACAAACTTGCCCGCAGCCAGGCA
CCGGTCTACATCAGCGGCGAATCTGGCAGCGGCAAGGAACTGGTGGCCCGATTGATTCATGAGCAGGGCCCGCGCGCCAG
CCAGCCATTCGTACCGGTGAACTGCGGGGCGATTCCTTCGGAGTTGATGGAGAGCGAGTTTTTCGGCCACCGCAAAGGCA
GTTTCAGCGGCGCGGTGGAGGATAAACCGGGACTGTTTCAGGCGGCCCATGGCGGCACGCTGTTTCTCGATGAAGTGGCG
GATTTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGGCAACAGGA
AACCGTGGTCGATGTGCGCATCCTCTGCGCGACGCACAAGGACCTCGATGCGGAAGTGGCTGCCGAGCGTTTCCGTCAGG
ATCTGTATTACCGGCTGAACGTGATCGAACTGCGTGTGCCGTCCCTGCGCGAACGTCGCGAGGACATCGAAGCACTGGCC
GGCCACATGCTCAAGCGCCTGGCCAATGGCACCGGGCAGCCGGCGGCACGCCTTCATCCCCATGCCCTCGAGGCGCTGAA
AAACTACCGCTTCCCGGGCAACGTGCGGGAGTTGGAGAACGTGCTCGAGCGGGCGCACACCCTATGTGAAAACCGCACGA
TCGAGACCGATGACTTACGCCTGAGTGAAGGTAACGGCGCCGCCGAGGGCGGGGTTGCCGATCTCACCCAGATCGACAAC
CTCGAAGACTATCTTGAAAGCGTCGAGCGCAAACTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGCCTGTCATTTCGGTCGATGCGCTACAGGCTCAAGAAACTGGGTCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	80.135	98.884	0.792
pilR	Acinetobacter baumannii strain A118	48.366	100	0.496