Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I876_RS14450 Genome accession   NC_021717
Coordinates   3320662..3321867 (+) Length   401 a.a.
NCBI ID   WP_020744116.1    Uniprot ID   -
Organism   Alteromonas mediterranea U7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3315662..3326867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I876_RS14425 (I876_14595) ampE 3316625..3317494 (-) 870 WP_020744113.1 beta-lactamase regulator AmpE -
  I876_RS14430 (I876_14600) ampD 3317525..3318061 (-) 537 WP_020744114.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  I876_RS14435 (I876_14605) - 3318237..3318755 (+) 519 WP_012519426.1 retropepsin-like aspartic protease family protein -
  I876_RS14440 (I876_14610) nadC 3318775..3319629 (+) 855 WP_015067810.1 carboxylating nicotinate-nucleotide diphosphorylase -
  I876_RS14445 (I876_14615) - 3320165..3320593 (+) 429 WP_020744115.1 pilin -
  I876_RS14450 (I876_14620) pilC 3320662..3321867 (+) 1206 WP_020744116.1 type II secretion system F family protein Machinery gene
  I876_RS14455 (I876_14625) pilD 3321985..3322878 (+) 894 WP_020744117.1 prepilin peptidase Machinery gene
  I876_RS14460 (I876_14630) coaE 3322900..3323514 (+) 615 WP_020744118.1 dephospho-CoA kinase -
  I876_RS14465 (I876_14635) zapD 3323728..3324480 (+) 753 WP_015067815.1 cell division protein ZapD -
  I876_RS14470 (I876_14640) yacG 3324571..3324798 (+) 228 WP_012519434.1 DNA gyrase inhibitor YacG -
  I876_RS14475 (I876_14645) - 3324991..3325863 (+) 873 WP_020744119.1 aspartoacylase -
  I876_RS14480 (I876_14650) mutT 3325954..3326337 (-) 384 WP_020744120.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 401 a.a.        Molecular weight: 43536.23 Da        Isoelectric Point: 9.7149

>NTDB_id=59549 I876_RS14450 WP_020744116.1 3320662..3321867(+) (pilC) [Alteromonas mediterranea U7]
MKAAIVFVWQGKDRHGQSRKGEISAGSLSEAKNLLRRQGISANRVKKLAKPLFGGAKKVTPADISVVSRQIATMLAAGVT
LIQSLDMIAQGHANPTMRKLLGEITDEVKSGNPLSSALRKHPLYFDDLYCDLVYTGEQSGALETIYDRIATYKEKAEALK
SKIKKAMFYPIAVMVVAFIVTTILLVFVVPQFEEIFSSFGAELPAFTQFVLAISRFVQDYGIFIAMGVAAAGFMFVRAHR
RSQKLRDTVDRNILKIPVIGEILKKASIARFTRTLATTFAAGVPLIGALESAAGASGNAVYRDAILYIRKEVAGGMPMHV
AMRATQVFPDMVTQMIAIGEESGSVDEMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGGLIVAMYLPIFQMGNV
V

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=59549 I876_RS14450 WP_020744116.1 3320662..3321867(+) (pilC) [Alteromonas mediterranea U7]
ATGAAAGCAGCAATAGTTTTTGTATGGCAAGGAAAAGACCGTCATGGGCAGTCTCGAAAAGGGGAAATTTCAGCGGGTTC
TCTTTCGGAAGCGAAAAACCTTCTTAGACGTCAGGGTATTTCTGCAAACAGAGTTAAAAAGCTTGCCAAACCGCTTTTTG
GTGGTGCAAAAAAAGTTACCCCTGCCGACATTTCTGTAGTATCTCGTCAGATAGCCACTATGCTAGCCGCAGGTGTAACA
CTTATACAATCTTTGGATATGATTGCACAAGGCCACGCCAATCCTACTATGCGTAAACTGCTTGGTGAAATCACCGATGA
AGTCAAATCCGGTAACCCACTGTCATCGGCACTTAGAAAACACCCCCTTTATTTTGACGACCTTTATTGTGATTTGGTTT
ACACCGGTGAACAGTCGGGCGCGCTAGAAACAATTTACGATCGTATTGCTACCTATAAAGAAAAGGCTGAAGCACTAAAA
TCAAAAATCAAAAAAGCGATGTTTTACCCTATCGCGGTTATGGTTGTTGCTTTTATTGTTACGACTATCCTTCTAGTTTT
CGTTGTACCACAGTTTGAAGAAATTTTTAGCAGCTTTGGCGCTGAACTCCCTGCGTTTACCCAGTTCGTACTGGCTATAT
CGCGTTTTGTACAAGACTACGGTATTTTTATTGCCATGGGTGTTGCTGCCGCAGGGTTTATGTTTGTGCGCGCCCATAGG
CGCAGTCAAAAGCTTCGCGATACGGTAGACCGCAATATTTTAAAAATACCTGTTATCGGTGAGATACTTAAAAAAGCCAG
TATCGCACGCTTTACCCGAACCCTTGCCACCACCTTTGCGGCAGGTGTACCGCTAATAGGCGCGTTAGAGTCGGCAGCGG
GTGCATCGGGTAACGCTGTTTATCGAGACGCGATACTCTATATACGCAAAGAAGTGGCTGGCGGTATGCCTATGCATGTG
GCCATGCGCGCAACTCAAGTATTTCCAGACATGGTGACTCAAATGATAGCCATAGGTGAAGAGTCTGGCTCTGTCGATGA
GATGCTAAGTAAAATTGCCACCATTTACGAAGCAGAAGTTGATGACATGGTAGACGGCTTAACCAGCTTGCTTGAGCCTA
TGATCATGGCCGTACTTGGCGTGGTTATTGGCGGCTTGATTGTGGCCATGTACCTGCCTATATTCCAGATGGGTAACGTG
GTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-190)

Type II secretion system (T2SS), protein F (T2SSF)

(271-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.838

98.753

0.581
  pilC Acinetobacter baumannii D1279779

53.401

99.002

0.529
  pilC Acinetobacter baylyi ADP1

53.266

99.252

0.529
  pilC Legionella pneumophila strain ERS1305867

52.75

99.751

0.526
  pilG Neisseria gonorrhoeae MS11

45.658

100

0.459
  pilC Vibrio cholerae strain A1552

45.455

98.753

0.449
  pilG Neisseria meningitidis 44/76-A

44.888

100

0.449
  pilC Vibrio campbellii strain DS40M4

43.182

98.753

0.426
  pilC Thermus thermophilus HB27

36.908

100

0.369

Multiple sequence alignment