Detailed information NTG0059550

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I876_RS14455
• Genome accession: NC_021717
• Coordinates: 3321985..3322878 (+)
• Length: 297 a.a.
• NCBI ID: WP_020744117.1
• Uniprot ID: -
• Organism: Alteromonas mediterranea U7
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3316985..3327878

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I876_RS14430 (I876_14600)	ampD	3317525..3318061 (-)	537	WP_020744114.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
I876_RS14435 (I876_14605)	-	3318237..3318755 (+)	519	WP_012519426.1	retropepsin-like aspartic protease family protein	-
I876_RS14440 (I876_14610)	nadC	3318775..3319629 (+)	855	WP_015067810.1	carboxylating nicotinate-nucleotide diphosphorylase	-
I876_RS14445 (I876_14615)	-	3320165..3320593 (+)	429	WP_020744115.1	pilin	-
I876_RS14450 (I876_14620)	pilC	3320662..3321867 (+)	1206	WP_020744116.1	type II secretion system F family protein	Machinery gene
I876_RS14455 (I876_14625)	pilD	3321985..3322878 (+)	894	WP_020744117.1	prepilin peptidase	Machinery gene
I876_RS14460 (I876_14630)	coaE	3322900..3323514 (+)	615	WP_020744118.1	dephospho-CoA kinase	-
I876_RS14465 (I876_14635)	zapD	3323728..3324480 (+)	753	WP_015067815.1	cell division protein ZapD	-
I876_RS14470 (I876_14640)	yacG	3324571..3324798 (+)	228	WP_012519434.1	DNA gyrase inhibitor YacG	-
I876_RS14475 (I876_14645)	-	3324991..3325863 (+)	873	WP_020744119.1	aspartoacylase	-
I876_RS14480 (I876_14650)	mutT	3325954..3326337 (-)	384	WP_020744120.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 32783.81 Da
• Isoelectric Point: 4.9051

>NTDB_id=59550 I876_RS14455 WP_020744117.1 3321985..3322878(+) (pilD) [Alteromonas mediterranea U7]
MDAIITLSQLYPAIFYTLIFLVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFTDSDTSLDPPNAQSQDDTFNLVKPDST
CPSCGHKIRAWENIPVISYLFLMGKCAKCKVGISVRYPLVELFTAIACTFAAYQFGATPQALWAVIFTYVLVALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQNIFVGTTDAIIGAAAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAFTGWQGLPV
IILLSSLVGAIAGIAIMVVQNKGKSLAIPFGPYLAVAGWLTLLFKAEIITTYLDYVL

Nucleotide

• Length: 894 bp

>NTDB_id=59550 I876_RS14455 WP_020744117.1 3321985..3322878(+) (pilD) [Alteromonas mediterranea U7]
ATGGACGCTATAATAACCCTTAGCCAACTATACCCCGCTATTTTCTATACCCTAATCTTCTTAGTGAGTTTAATGGTTGG
CAGCTTTTTAAACGTAGTGATCTATCGCTTACCCATTATGATGGAGCGCAGCTGGCAGCAGGAATACCAAAGCTACTTTA
CCGACAGTGATACCAGCTTAGACCCACCTAACGCTCAATCGCAAGACGATACCTTTAACCTGGTAAAACCGGACAGTACT
TGCCCCAGCTGCGGCCACAAAATTCGCGCATGGGAAAACATTCCTGTTATTAGCTACCTATTTCTAATGGGCAAATGTGC
TAAGTGCAAGGTAGGTATTTCAGTACGCTATCCGCTGGTTGAGCTTTTCACCGCCATCGCCTGCACCTTCGCAGCCTATC
AATTTGGCGCTACACCTCAAGCGCTTTGGGCCGTAATTTTTACCTACGTACTCGTGGCTTTGCTATTTATCGATTTAGAT
AAAATGTTGTTGCCAGACCAGCTCACGCTTCCTTTACTTTGGCTTGGGCTGCTGTTAAGTACTCAAAACATTTTTGTTGG
TACGACCGACGCCATTATTGGCGCGGCGGCAGGCTATTTAAGCTTGTGGTCGGTATATTGGCTATTTAAGCTTGTTACGG
GCAAGGAAGGCATGGGTTATGGCGATTTTAAATTGCTTGCCGCCTTAGGTGCGTTCACAGGCTGGCAAGGGCTCCCCGTT
ATCATCTTACTTTCATCATTAGTGGGCGCCATTGCAGGTATTGCTATTATGGTTGTGCAAAATAAGGGGAAGTCCTTAGC
CATCCCCTTTGGCCCTTACCTTGCTGTAGCAGGGTGGCTTACGCTGCTTTTTAAAGCTGAAATTATCACTACTTACCTTG
ATTACGTGCTTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (146-254)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-135)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	53.793	97.643	0.525
pilD	Vibrio cholerae strain A1552	53.633	97.306	0.522
pilD	Acinetobacter baumannii D1279779	50.896	93.939	0.478
pilD	Acinetobacter nosocomialis M2	50.538	93.939	0.475
pilD	Neisseria gonorrhoeae MS11	50	87.542	0.438