NTDB

Overview

Name	dprA	Type	Machinery gene
Locus tag	PAC42_RS00105	Genome accession	NZ_CP097560
Coordinates	22412..23500 (+)	Length	362 a.a.
NCBI ID	WP_016264002.1	Uniprot ID	-
Organism	Pseudomonas aeruginosa strain C4.2
Function	ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 17412..28500

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PAC42_RS00085 (PAC42_00085)	rsmB	18307..19611 (-)	1305	WP_003122291.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
PAC42_RS00090 (PAC42_00090)	fmt	19608..20552 (-)	945	WP_017001989.1	methionyl-tRNA formyltransferase	-
PAC42_RS00095 (PAC42_00095)	def	20607..21113 (-)	507	WP_003107059.1	peptide deformylase	-
PAC42_RS00100 (PAC42_00100)	tsaP	21252..22277 (+)	1026	WP_003097294.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
PAC42_RS00105 (PAC42_00105)	dprA	22412..23500 (+)	1089	WP_016264002.1	DNA-processing protein DprA	Machinery gene
PAC42_RS00110 (PAC42_00110)	-	23541..24098 (+)	558	WP_003097300.1	L-threonylcarbamoyladenylate synthase	-
PAC42_RS00115 (PAC42_00115)	-	24108..25085 (-)	978	WP_003111202.1	NADPH:quinone reductase	-
PAC42_RS00120 (PAC42_00120)	hemF	25276..26193 (+)	918	WP_003097311.1	oxygen-dependent coproporphyrinogen oxidase	-
PAC42_RS00125 (PAC42_00125)	aroE	26251..27075 (+)	825	WP_003111201.1	shikimate dehydrogenase	-
PAC42_RS00130 (PAC42_00130)	-	27186..28172 (+)	987	WP_003111200.1	phospholipase C	-

Sequence

Protein

Download Length: 362 a.a. Molecular weight: 37689.23 Da Isoelectric Point: 7.0670

                                >NTDB_id=595378 PAC42_RS00105 WP_016264002.1 22412..23500(+) (dprA) [Pseudomonas aeruginosa strain C4.2]

MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR

RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA

AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS

GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP

YTSEGLAAASGMTLPDVLATLCELELDGRVACEAGTWVHRSG

Nucleotide

Download Length: 1089 bp

                                >NTDB_id=595378 PAC42_RS00105 WP_016264002.1 22412..23500(+) (dprA) [Pseudomonas aeruginosa strain C4.2]

ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT

GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG

CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC

AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT

CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA

CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC

GCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGGCG

CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC

CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC

GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG

CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG

GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC

TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGATGTGCTGGCGACGCTCTGCGAACTGGAACTCGA

CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
dprA	Vibrio campbellii strain DS40M4	43.514	100	0.445
dprA	Vibrio cholerae strain A1552	43.048	100	0.445
dprA	Vibrio cholerae O1 biovar El Tor strain E7946	43.048	100	0.445
dprA	Legionella pneumophila strain ERS1305867	43.38	98.066	0.425
dprA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.254	98.066	0.414
dprA	Acinetobacter baumannii D1279779	37.845	100	0.378
dprA	Neisseria gonorrhoeae strain FA1090	44.554	83.702	0.373
dprA	Acinetobacter baumannii strain A118	38.177	96.961	0.37
dprA	Neisseria meningitidis MC58	46.048	80.387	0.37
dprA	Neisseria meningitidis strain C311	46.048	80.387	0.37
dprA	Glaesserella parasuis strain SC1401	46.853	79.006	0.37
dprA	Neisseria gonorrhoeae MS11	44.224	83.702	0.37

Detailed information NTG0595378