Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K2O51_RS28175 Genome accession   NZ_CP080767
Coordinates   3341444..3342718 (+) Length   424 a.a.
NCBI ID   WP_011299106.1    Uniprot ID   -
Organism   Cupriavidus pinatubonensis strain HN-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3336444..3347718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K2O51_RS28150 (K2O51_28150) rpmA 3337150..3337410 (-) 261 WP_011299102.1 50S ribosomal protein L27 -
  K2O51_RS28155 (K2O51_28155) rplU 3337450..3337761 (-) 312 WP_011299103.1 50S ribosomal protein L21 -
  K2O51_RS28160 (K2O51_28160) ispB 3338256..3339185 (+) 930 WP_049796430.1 octaprenyl diphosphate synthase -
  K2O51_RS28170 (K2O51_28170) pilF 3339669..3341408 (+) 1740 WP_041680065.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K2O51_RS28175 (K2O51_28175) pilC 3341444..3342718 (+) 1275 WP_011299106.1 type II secretion system F family protein Machinery gene
  K2O51_RS28180 (K2O51_28180) pilD 3342722..3343609 (+) 888 WP_245001889.1 A24 family peptidase Machinery gene
  K2O51_RS28185 (K2O51_28185) coaE 3343678..3344304 (+) 627 WP_140953486.1 dephospho-CoA kinase -
  K2O51_RS28190 (K2O51_28190) zapD 3344519..3345277 (+) 759 WP_011299109.1 cell division protein ZapD -
  K2O51_RS28195 (K2O51_28195) - 3345282..3345473 (+) 192 WP_011299110.1 DNA gyrase inhibitor YacG -
  K2O51_RS28200 (K2O51_28200) - 3345496..3347535 (-) 2040 WP_220631070.1 oligopeptide transporter, OPT family -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 46559.71 Da        Isoelectric Point: 10.2365

>NTDB_id=594843 K2O51_RS28175 WP_011299106.1 3341444..3342718(+) (pilC) [Cupriavidus pinatubonensis strain HN-2]
MATRAPAASARAAVPPRAKAGRAGRKAPTQYIFEWEGKDRKGKTFTGEQRAENQAEVTAALRKQGLTVVKLKKRKAARGK
KITEKDIAYFTRQLSTMLKAGIPLLQSIDIIARGHANPNFTQLLSDIRFDIESGSSMAAAFRRHPRYFDTLYCNLIDAGE
QGGILDSLLERLSLYMEKTIALKSQIKSAMIYPIAVLTVAFAVTVILMLFVIPAFKGVFSSFGANLPAPTLVVIAISDFF
VAYWYIVIGIPVGAIAFYLRALKKSEKVQRTTDRIMLKLPIFGSLFRKAVIARWTRTLATMFAAGTPLVESMESVAGAAG
NWVYYDATREIEQSVRIGTSLTNAMQATHVFDNMVLQMTQIGEESGALDNMLIKVAEFYEREVDDAVAAISSLIEPLIIV
VLGVLIGGMVVAMYLPIFKLGQVV

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=594843 K2O51_RS28175 WP_011299106.1 3341444..3342718(+) (pilC) [Cupriavidus pinatubonensis strain HN-2]
ATGGCAACGCGCGCACCAGCTGCGAGCGCACGGGCGGCAGTGCCGCCACGCGCGAAGGCAGGACGAGCAGGACGTAAAGC
ACCCACGCAGTACATCTTCGAGTGGGAAGGCAAGGACCGCAAAGGCAAGACGTTCACCGGGGAACAGCGGGCCGAAAACC
AGGCCGAGGTCACGGCGGCGCTGCGCAAGCAGGGCCTCACGGTGGTCAAGCTCAAGAAGCGCAAGGCCGCGCGCGGCAAG
AAGATCACCGAGAAGGACATCGCGTATTTCACGCGCCAGCTTTCGACCATGCTGAAGGCTGGCATTCCGCTGCTGCAGTC
GATCGACATCATCGCGCGCGGGCACGCCAATCCGAACTTCACGCAGCTGCTGTCCGACATCCGCTTCGACATCGAATCCG
GCAGCAGCATGGCGGCGGCGTTCCGACGCCATCCGCGCTACTTCGACACGCTGTACTGCAACCTGATCGACGCCGGCGAG
CAGGGCGGTATTCTCGACTCCCTGCTCGAGCGCCTGTCGCTCTACATGGAAAAGACCATCGCGCTGAAGAGCCAGATCAA
GTCCGCGATGATCTACCCGATCGCGGTGCTGACCGTGGCCTTTGCCGTGACGGTGATCCTGATGCTGTTCGTGATCCCGG
CGTTCAAGGGTGTGTTCTCGAGCTTCGGCGCGAACCTGCCGGCGCCGACGCTGGTCGTGATCGCCATCTCGGACTTCTTC
GTCGCGTACTGGTACATCGTCATCGGCATACCGGTGGGGGCAATCGCGTTCTATTTACGGGCCTTGAAGAAATCCGAGAA
GGTCCAGCGCACCACGGACCGCATAATGCTGAAGCTGCCCATTTTCGGCAGCCTCTTCCGCAAGGCCGTGATCGCGCGCT
GGACGCGTACGCTCGCCACCATGTTCGCGGCGGGTACGCCGCTGGTGGAATCGATGGAATCCGTGGCCGGCGCGGCGGGC
AACTGGGTCTACTACGACGCCACGCGCGAGATCGAACAGTCCGTGCGCATCGGTACCAGCCTGACCAACGCCATGCAAGC
CACGCACGTGTTCGACAACATGGTGCTGCAGATGACGCAGATCGGCGAGGAATCGGGCGCGCTGGACAATATGCTCATCA
AGGTGGCGGAGTTCTACGAGCGCGAGGTCGATGACGCCGTGGCGGCCATTTCGAGCCTGATCGAGCCGCTCATTATCGTG
GTGCTGGGCGTGCTCATCGGCGGTATGGTGGTCGCGATGTACCTGCCGATCTTCAAGCTGGGACAGGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(90-213)

Type II secretion system (T2SS), protein F (T2SSF)

(294-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

51.117

95.047

0.486
  pilG Neisseria gonorrhoeae MS11

50.5

94.34

0.476
  pilG Neisseria meningitidis 44/76-A

50.25

94.34

0.474
  pilC Acinetobacter baumannii D1279779

48.403

95.991

0.465
  pilC Legionella pneumophila strain ERS1305867

48.762

95.283

0.465
  pilC Acinetobacter baylyi ADP1

47.666

95.991

0.458
  pilC Vibrio cholerae strain A1552

39.85

94.104

0.375
  pilC Thermus thermophilus HB27

37.5

98.113

0.368
  pilC Vibrio campbellii strain DS40M4

38.462

95.047

0.366