Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABEKA_RS06735 Genome accession   NZ_CP080636
Coordinates   1124033..1125262 (-) Length   409 a.a.
NCBI ID   WP_222110693.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain EK30A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1119033..1130262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEKA_RS06710 (ABEKA_1094) - 1120414..1120737 (+) 324 WP_004281089.1 pyrimidine/purine nucleoside phosphorylase -
  ABEKA_RS06715 (ABEKA_1095) rlmB 1120872..1121621 (+) 750 WP_005101440.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABEKA_RS06720 (ABEKA_1096) - 1121625..1122551 (+) 927 WP_222110690.1 DMT family transporter -
  ABEKA_RS06725 (ABEKA_1097) coaE 1122572..1123171 (-) 600 WP_222110691.1 dephospho-CoA kinase -
  ABEKA_RS17320 (ABEKA_1098) pilD 1123173..1124033 (-) 861 WP_222110692.1 A24 family peptidase Machinery gene
  ABEKA_RS06735 (ABEKA_1099) pilC 1124033..1125262 (-) 1230 WP_222110693.1 type II secretion system F family protein Machinery gene
  ABEKA_RS06740 (ABEKA_1100) pilB 1125294..1127003 (-) 1710 WP_222110694.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABEKA_RS06745 (ABEKA_1101) tpiA 1127280..1128071 (+) 792 WP_005094392.1 triose-phosphate isomerase -
  ABEKA_RS06750 (ABEKA_1102) secG 1128085..1128414 (+) 330 WP_222110695.1 preprotein translocase subunit SecG -
  ABEKA_RS06780 (ABEKA_1108) rimP 1129483..1130007 (+) 525 WP_222110696.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44866.33 Da        Isoelectric Point: 9.8732

>NTDB_id=594619 ABEKA_RS06735 WP_222110693.1 1124033..1125262(-) (pilC) [Acinetobacter lwoffii strain EK30A]
MAAVKKGQMMPIFSYEGIDRKGAKIKGELPAKNMALAKVTLRKQGISIKTIREKKKNILEGLMKKRVSTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPAAVVVVALIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIAIGAVI
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEDAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=594619 ABEKA_RS06735 WP_222110693.1 1124033..1125262(-) (pilC) [Acinetobacter lwoffii strain EK30A]
ATGGCAGCAGTAAAGAAAGGCCAGATGATGCCGATCTTCAGCTATGAAGGAATTGATCGTAAAGGGGCAAAGATCAAGGG
GGAATTGCCAGCAAAAAATATGGCTTTGGCCAAGGTCACCCTTCGAAAACAAGGTATCAGCATCAAGACCATTCGGGAAA
AGAAAAAAAATATTCTCGAAGGCTTAATGAAAAAACGTGTCAGCACACTGGATATCACCATTTTTACCCGACAATTGGCG
ACCATGATGAAAGCCGGGGTACCACTGGTACAAGGCTTTGAAATTGTCGCAGAAGGTCTGGAAAATCCGGCGATGCGTGA
AGTTGTACTAGGAATTAAAGGTGAGGTTGAAGGCGGTAATACTTTTGCCGGAGCACTGCGCAAATATCCACAATATTTCG
ACAACCTATTCTGTTCACTGGTCGAATCTGGTGAACAATCCGGTGCTTTAGAAACCATGCTAGATCGCGTTGCGATTTAC
AAAGAAAAAAGCGAACTACTCAAGCAAAAAATTAAAAAAGCCATGAAATATCCGGCTGCGGTGGTTGTAGTCGCCCTGAT
TGTTACCATTATTCTGATGGTCAAAGTGGTCCCGGTTTTCCAAGATTTATTCTCTTCATTTGGTGCGGACTTACCGGCTT
TTACCAAAATGGTGGTCAATATGTCGGAATGGATGCAAAAGTATTGGTTCCTGCTGATTATCGCCATTGGGGCCGTGATT
ACCGCTTTTCTTGAAGCGAAAAAACGCAGCAAGAAATTCCGCGATTTTCTGGATAAAGCCGCACTCAAAGCCCCGATTTT
TGGTGACCTGGTGTATAAAGCGATTATTGCGCGTTATAGCCGTACCCTCGCCACGACTTTCGCAGCAGGTGTACCTTTGA
TTGATGCACTGGAATCCACTGCCGGCGCTACCAATAACGTCGTGTATGAAGATGCCGTGATGAAAATCCGTGAAGATGTC
GCCACAGGTCAACAACTACAGTTTGCCATGCGCGTGACCAACAAATTCCCATCCATGGCAGTACAAATGGTCGCAATTGG
TGAAGAATCGGGTGCACTAGATGCCATGCTGGATAAAGTTGCCACGCATTATGAAAACGAAGTGGATAATGCGGTTGACG
GCTTAACCTCGATGATGGAACCGCTCATTATGGCTGTTCTCGGTGTGCTTGTCGGTGGTCTGGTGATCGCCATGTACCTT
CCAATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.172

99.511

0.897
  pilC Acinetobacter baylyi ADP1

83.047

99.511

0.826
  pilC Pseudomonas stutzeri DSM 10701

62.312

97.311

0.606
  pilC Legionella pneumophila strain ERS1305867

53.904

97.066

0.523
  pilG Neisseria gonorrhoeae MS11

45.98

97.311

0.447
  pilG Neisseria meningitidis 44/76-A

45.98

97.311

0.447
  pilC Vibrio cholerae strain A1552

43.873

99.756

0.438
  pilC Vibrio campbellii strain DS40M4

42.065

97.066

0.408
  pilC Thermus thermophilus HB27

37.037

99.022

0.367