NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	ABEKA_RS17320	Genome accession	NZ_CP080636
Coordinates	1123173..1124033 (-)	Length	286 a.a.
NCBI ID	WP_222110692.1	Uniprot ID	-
Organism	Acinetobacter lwoffii strain EK30A
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1118173..1129033

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABEKA_RS06705 (ABEKA_1092)	recN	1118310..1119971 (-)	1662	WP_180076075.1	DNA repair protein RecN	-
ABEKA_RS06710 (ABEKA_1094)	-	1120414..1120737 (+)	324	WP_004281089.1	pyrimidine/purine nucleoside phosphorylase	-
ABEKA_RS06715 (ABEKA_1095)	rlmB	1120872..1121621 (+)	750	WP_005101440.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ABEKA_RS06720 (ABEKA_1096)	-	1121625..1122551 (+)	927	WP_222110690.1	DMT family transporter	-
ABEKA_RS06725 (ABEKA_1097)	coaE	1122572..1123171 (-)	600	WP_222110691.1	dephospho-CoA kinase	-
ABEKA_RS17320 (ABEKA_1098)	pilD	1123173..1124033 (-)	861	WP_222110692.1	A24 family peptidase	Machinery gene
ABEKA_RS06735 (ABEKA_1099)	pilC	1124033..1125262 (-)	1230	WP_222110693.1	type II secretion system F family protein	Machinery gene
ABEKA_RS06740 (ABEKA_1100)	pilB	1125294..1127003 (-)	1710	WP_222110694.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABEKA_RS06745 (ABEKA_1101)	tpiA	1127280..1128071 (+)	792	WP_005094392.1	triose-phosphate isomerase	-
ABEKA_RS06750 (ABEKA_1102)	secG	1128085..1128414 (+)	330	WP_222110695.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32119.47 Da Isoelectric Point: 8.0564

                                >NTDB_id=594634 ABEKA_RS17320 WP_222110692.1 1123173..1124033(-) (pilD) [Acinetobacter lwoffii strain EK30A]

MQDLIQYFIQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQMFLHPEQPVIDETKLSLSKPASACPKCHQP

IRWYQNIPVISWLVLRGKCSNCQNPISIRYPFVEILTAVCALIVVVVFGPTLQMLFGLILTYVLIALTFIDFDTQLLPDR

YTLPLAALGLGVNSYALYTSPSSAIWGYIIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSL

VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide

Download Length: 861 bp

                                >NTDB_id=594634 ABEKA_RS17320 WP_222110692.1 1123173..1124033(-) (pilD) [Acinetobacter lwoffii strain EK30A]

ATGCAAGATCTTATTCAATATTTTATTCAAAACCCGACGGCGTTGTATATCGCAGTTGGGCTTTTTAGTTTATGTATCGG

CAGCTTCCTGAATGTAGTGATCTACCGTACTCCCAAGATGATGGAACAGGAATGGCGTACCGATTGCCAGATGTTCCTGC

ATCCGGAACAGCCGGTGATTGATGAAACTAAATTAAGTTTAAGTAAACCCGCTTCGGCTTGTCCCAAATGTCATCAGCCG

ATCCGCTGGTACCAGAATATTCCAGTCATCAGCTGGCTGGTCCTGCGCGGAAAATGTAGCAACTGCCAGAATCCCATCAG

TATCCGCTATCCATTTGTTGAAATTCTGACGGCAGTTTGTGCATTGATCGTTGTCGTTGTATTTGGCCCTACCCTACAAA

TGCTGTTTGGACTGATCCTGACTTATGTGCTGATTGCCCTAACCTTTATTGATTTTGATACCCAGTTATTACCGGACCGT

TATACCCTGCCCCTGGCTGCACTAGGTCTGGGCGTAAATAGTTATGCACTCTATACCTCCCCAAGCTCTGCCATCTGGGG

CTACATCATTGGCTTTTTATGTTTATGGATAGTGTATTACCTGTTTAAAATCATCACCGGTAAAGAAGGTATGGGCTATG

GCGATTTTAAACTGCTTGCGGCTTTGGGCGCCTGGATGGGTCCATTATTATTGCCTTTAATTGTGCTGCTGTCTTCTCTG

GTAGGTGCGATTATTGGCATCATTCTGCTAAAAGTTCGCAAGGAAAATCAGCCTTTTGCTTTTGGTCCTTATATTGCGAT

TGCCGGCTGGATTGCTTTTCTTTGGGGTGAACAAATTATGAAAGTGTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	82.456	99.65	0.822
pilD	Acinetobacter baumannii D1279779	82.105	99.65	0.818
pilD	Vibrio cholerae strain A1552	53.759	93.007	0.5
pilD	Vibrio campbellii strain DS40M4	50.175	99.65	0.5
pilD	Neisseria gonorrhoeae MS11	46.29	98.951	0.458

Detailed information NTG0594634