Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   K3F44_RS21205 Genome accession   NZ_CP080625
Coordinates   4594827..4596098 (+) Length   423 a.a.
NCBI ID   WP_150573352.1    Uniprot ID   -
Organism   Pseudomonas sp. S07E 245     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4589827..4601098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3F44_RS21185 (K3F44_21185) - 4589856..4592306 (-) 2451 WP_220632912.1 penicillin-binding protein 1A -
  K3F44_RS21190 (K3F44_21190) pilM 4592467..4593363 (+) 897 WP_220632913.1 type IV pilus biogenesis protein PilM -
  K3F44_RS21195 (K3F44_21195) - 4593363..4593899 (+) 537 WP_220632914.1 PilN domain-containing protein -
  K3F44_RS21200 (K3F44_21200) - 4593932..4594906 (+) 975 WP_220632915.1 pilus assembly protein PilP -
  K3F44_RS21205 (K3F44_21205) pilQ 4594827..4596098 (+) 1272 WP_150573352.1 type IV pilus secretin PilQ Machinery gene
  K3F44_RS21210 (K3F44_21210) aroK 4596103..4596621 (+) 519 WP_101315515.1 shikimate kinase AroK -
  K3F44_RS21215 (K3F44_21215) aroB 4596719..4597816 (+) 1098 WP_101315517.1 3-dehydroquinate synthase -
  K3F44_RS21220 (K3F44_21220) - 4597832..4599439 (+) 1608 WP_181088359.1 AAA family ATPase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45699.37 Da        Isoelectric Point: 5.2207

>NTDB_id=594433 K3F44_RS21205 WP_150573352.1 4594827..4596098(+) (pilQ) [Pseudomonas sp. S07E 245]
MKLGQLAMLLATVLAMHGAQAKTYQGEPLSLNFQDVEVRAVLQVLADYAGINLVVSDTANGNVTLRLIQVPWDQALDLVL
RSKGLASRQEGNVLLVAPAAELAGQSREERLGRELDAQLQPLERALLPVHHAKAAELAELLLATLADDGILTGRGSLGVD
ARTNTLVAHQPAERLAELRRLVTELDVPVRQVLIEARIVEANVDYEKSLGVRWGKPFSGAEGRSGKGLFVDLGVDRPTSA
VGLGLLRGDALLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSKSGATSVSFREASLSLEVTPQITAD
GQVIMTVRVTKDEPDYVNALNDVPPIRKNEVNAKVRVADGQTIVIGGVYSTTQNNVVDKVPFFGDLPYVGRLFRRDALQE
KKSELLVFLTPRIMSDQAIAVSR

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=594433 K3F44_RS21205 WP_150573352.1 4594827..4596098(+) (pilQ) [Pseudomonas sp. S07E 245]
ATGAAGCTCGGACAACTGGCAATGCTGCTGGCGACGGTTCTGGCGATGCACGGGGCGCAAGCGAAGACCTATCAGGGTGA
ACCGCTGTCGCTGAATTTTCAGGATGTTGAAGTTCGCGCAGTGCTGCAGGTGCTGGCCGACTATGCTGGGATCAACCTGG
TGGTCAGTGATACGGCAAACGGCAACGTTACTCTGAGGTTGATACAGGTGCCCTGGGATCAGGCGCTGGATCTGGTCCTG
CGCAGCAAAGGGCTGGCGAGCCGGCAGGAAGGCAATGTGCTGCTGGTAGCGCCGGCGGCCGAGCTGGCTGGGCAATCCCG
CGAAGAACGGCTGGGCCGGGAGCTGGACGCCCAGTTGCAGCCGCTCGAACGCGCGTTGTTGCCAGTGCATCACGCCAAGG
CAGCGGAGCTGGCCGAGTTGCTGCTGGCGACCTTGGCCGACGACGGCATCCTGACCGGGCGCGGCAGCCTGGGTGTCGAT
GCGCGGACCAACACGCTGGTGGCACATCAACCGGCAGAGCGACTTGCCGAGCTGCGCCGACTGGTCACCGAGCTGGATGT
GCCGGTGCGGCAGGTGCTGATCGAAGCACGCATTGTCGAAGCCAACGTCGACTATGAAAAAAGCCTCGGGGTGCGCTGGG
GCAAGCCGTTCAGCGGCGCCGAAGGCCGCAGCGGCAAAGGGCTGTTCGTCGATCTCGGCGTGGATCGGCCAACTTCAGCG
GTGGGTCTGGGGTTGCTGCGCGGCGACGCCTTGCTGGATCTGGAGCTCAGCGCGATGGAAAAGAGCGGCAATGGCGAAAT
CATCTCGCAGCCCAAGGTGGTGACCGCCGACAAGGAAACCGCGCGCATCCTCAAGGGCACCGAAGTGCCATATCAGGAAA
CCAGCAAGAGCGGCGCGACCTCGGTGTCGTTTCGCGAAGCCTCGCTATCGCTCGAAGTTACCCCGCAGATCACCGCCGAT
GGTCAGGTAATCATGACCGTGCGCGTGACCAAGGACGAGCCGGATTACGTCAATGCACTCAACGATGTTCCACCGATTCG
CAAGAACGAGGTCAACGCCAAGGTGCGCGTGGCCGACGGCCAGACCATCGTCATCGGTGGCGTCTACTCGACTACGCAAA
ACAATGTGGTCGACAAGGTGCCATTTTTCGGTGATCTGCCGTATGTTGGGCGGCTGTTTCGACGCGATGCATTACAAGAG
AAAAAATCCGAGCTGCTGGTCTTCCTGACTCCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(258-414)

Bacterial type II/III secretion system short domain (Secretin_N)

(126-191)

Secretin and TonB N terminus short domain (STN)

(52-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

58.716

100

0.605
  pilQ Acinetobacter baumannii strain A118

40.393

100

0.437
  pilQ Acinetobacter baumannii D1279779

40.393

100

0.437
  comQ Acinetobacter baylyi ADP1

40.57

100

0.437
  pilQ Legionella pneumophila strain Lp02

42.18

99.764

0.421
  pilQ Legionella pneumophila strain ERS1305867

41.469

99.764

0.414
  pilQ Vibrio campbellii strain DS40M4

40.376

100

0.407
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

40.385

98.345

0.397
  pilQ Vibrio cholerae strain A1552

40.385

98.345

0.397
  pilQ Neisseria meningitidis MC58

36.429

99.291

0.362
  pilQ Neisseria meningitidis M1080

36.429

99.291

0.362