Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K1516_RS17180 Genome accession   NZ_CP080573
Coordinates   3702394..3703653 (+) Length   419 a.a.
NCBI ID   WP_153855677.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain FZD2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3688260..3724766 3702394..3703653 within 0


Gene organization within MGE regions


Location: 3688260..3724766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1516_RS17115 (K1516_17120) - 3688260..3688934 (+) 675 WP_248858193.1 hypothetical protein -
  K1516_RS17120 (K1516_17125) - 3688928..3689941 (+) 1014 WP_248858194.1 hypothetical protein -
  K1516_RS17125 (K1516_17130) - 3689935..3690951 (+) 1017 WP_110713347.1 TraB/GumN family protein -
  K1516_RS17130 (K1516_17135) - 3691270..3691539 (+) 270 WP_110713349.1 hypothetical protein -
  K1516_RS17135 (K1516_17140) - 3691591..3693348 (+) 1758 WP_164162035.1 ABC transporter transmembrane domain-containing protein -
  K1516_RS17140 (K1516_17145) sucD 3693466..3694341 (-) 876 WP_005410793.1 succinate--CoA ligase subunit alpha -
  K1516_RS17145 (K1516_17150) sucC 3694362..3695531 (-) 1170 WP_004154430.1 ADP-forming succinate--CoA ligase subunit beta -
  K1516_RS17150 (K1516_17155) - 3695937..3697550 (+) 1614 WP_164162034.1 ATP-binding protein -
  K1516_RS17155 (K1516_17160) pilR 3697611..3698984 (+) 1374 WP_110713353.1 sigma-54 dependent transcriptional regulator Regulator
  K1516_RS17160 (K1516_17165) pilB 3699111..3700841 (-) 1731 WP_248858195.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K1516_RS17165 (K1516_17170) - 3701057..3701464 (-) 408 WP_180854230.1 pilin -
  K1516_RS17175 (K1516_17175) comP 3701590..3702039 (-) 450 WP_248858196.1 pilin Machinery gene
  K1516_RS17180 (K1516_17180) pilC 3702394..3703653 (+) 1260 WP_153855677.1 type II secretion system F family protein Machinery gene
  K1516_RS17185 (K1516_17185) - 3703662..3704525 (+) 864 WP_010481503.1 A24 family peptidase -
  K1516_RS17190 (K1516_17190) coaE 3704537..3705148 (+) 612 WP_248858197.1 dephospho-CoA kinase -
  K1516_RS17195 (K1516_17195) - 3705278..3705664 (-) 387 WP_248858198.1 hypothetical protein -
  K1516_RS17200 (K1516_17200) - 3706089..3708254 (-) 2166 WP_248858199.1 DUF2235 domain-containing protein -
  K1516_RS17205 (K1516_17205) - 3708251..3708877 (-) 627 WP_248858200.1 DUF3304 domain-containing protein -
  K1516_RS17210 (K1516_17210) - 3708878..3709843 (-) 966 WP_248858202.1 DUF2235 domain-containing protein -
  K1516_RS17215 (K1516_17215) - 3710020..3710646 (-) 627 WP_164162028.1 DUF3304 domain-containing protein -
  K1516_RS17220 (K1516_17220) - 3710647..3711408 (-) 762 WP_343236006.1 DUF2235 domain-containing protein -
  K1516_RS22160 - 3711385..3711675 (+) 291 WP_343236007.1 hypothetical protein -
  K1516_RS17225 (K1516_17230) - 3712039..3712374 (-) 336 WP_248858205.1 hypothetical protein -
  K1516_RS17230 (K1516_17235) - 3712413..3713417 (-) 1005 WP_248858206.1 DUF2235 domain-containing protein -
  K1516_RS17235 (K1516_17240) - 3713591..3714208 (-) 618 WP_248858207.1 DUF3304 domain-containing protein -
  K1516_RS17240 (K1516_17245) - 3714375..3715190 (-) 816 WP_248858208.1 DUF4123 domain-containing protein -
  K1516_RS17245 (K1516_17250) tssI 3715183..3717792 (-) 2610 WP_248858209.1 type VI secretion system Vgr family protein -
  K1516_RS17250 (K1516_17255) - 3718015..3718431 (-) 417 WP_248858210.1 hypothetical protein -
  K1516_RS17255 (K1516_17260) - 3718702..3720072 (-) 1371 WP_110713374.1 HAMP domain-containing sensor histidine kinase -
  K1516_RS17260 (K1516_17265) - 3720035..3720712 (-) 678 WP_005410804.1 response regulator transcription factor -
  K1516_RS17265 (K1516_17270) - 3720725..3721210 (-) 486 WP_110713376.1 hypothetical protein -
  K1516_RS17270 (K1516_17275) rimK 3721496..3722374 (-) 879 WP_110713377.1 30S ribosomal protein S6--L-glutamate ligase -
  K1516_RS17275 (K1516_17280) - 3722504..3722941 (+) 438 WP_180846449.1 thioesterase family protein -
  K1516_RS17280 (K1516_17285) - 3722942..3724096 (-) 1155 WP_248858211.1 hypothetical protein -
  K1516_RS17285 (K1516_17290) - 3724242..3724766 (+) 525 WP_248858212.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45808.23 Da        Isoelectric Point: 10.1408

>NTDB_id=594160 K1516_RS17180 WP_153855677.1 3702394..3703653(+) (pilC) [Stenotrophomonas maltophilia strain FZD2]
MSVSRSAIKKEPVARATMDLQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKTKPKPLFGAAGKPIKPKD
IAFFSRQMATMMKSGVPIVSALEIIGSGHKNPRMKKMVESVRADIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENMEALKGKIKKALFYPAMVVVVAFVVSAILLMFVVPQFEEVFQSFGAELPAFTQMIVAASRLMLSWWWL
LLIILVGGSVGLLMAYKRSPSMQHSFDRLILKVPVIGQLMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
SVLRMRDDVSVGYPVNMAMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNTVDALSSLLEPMIMVFIGTIV
GGIVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=594160 K1516_RS17180 WP_153855677.1 3702394..3703653(+) (pilC) [Stenotrophomonas maltophilia strain FZD2]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGCGCCACCATGGACTTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCAAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGTC
AGGGGATCAATCCCGGCCAGGTCAAGACCAAGCCCAAGCCGCTGTTCGGTGCGGCGGGGAAGCCGATCAAGCCCAAGGAC
ATTGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCAGGTGTGCCGATTGTTTCAGCACTGGAGATCATTGGCAG
CGGGCACAAGAACCCCCGCATGAAGAAGATGGTTGAGAGCGTCCGCGCGGATATCGAGGGCGGTTCTTCGCTGCATGAAG
CCATCAGCAAGCACCCTGTGCAGTTCGACGAGCTCTACCGGAATCTGGTGCGTGCCGGCGAGGGCGCCGGTGTACTGGAA
ACCGTACTGGACACGGTCGCTACCTACAAAGAGAACATGGAAGCCCTCAAGGGCAAGATCAAAAAAGCCCTGTTCTATCC
GGCGATGGTCGTCGTGGTGGCCTTTGTCGTATCTGCAATCCTGCTGATGTTCGTCGTCCCGCAGTTCGAGGAGGTCTTCC
AGAGCTTCGGCGCGGAACTCCCCGCGTTCACTCAGATGATCGTGGCGGCATCCCGCCTCATGCTGTCCTGGTGGTGGCTG
CTTCTGATCATCCTTGTAGGTGGCAGCGTTGGACTCCTGATGGCTTACAAGCGCTCACCCTCGATGCAGCACTCGTTCGA
TCGCCTGATCCTGAAGGTCCCAGTGATCGGCCAGCTGATGCACAACAGTTCGATCGCCCGTTTCGCCCGTACCACCGCCG
TGACCTTCAAGGCCGGCGTACCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGCGCCACTGGCAACAAGGTCTATGAGGAA
TCCGTGCTGCGCATGCGCGACGATGTCTCGGTCGGCTATCCGGTCAACATGGCCATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAGGAGGCCGGCGCCCTGGATGCCATGCTGTTCAAGGTAGCCGAGTATTATG
AGCAGGAAGTCAACAATACTGTGGATGCTCTGAGCAGCCTGCTGGAACCGATGATCATGGTATTCATTGGCACCATCGTA
GGTGGCATTGTCATCGGCATGTACCTGCCCATCTTCAAACTCGGCGCCGTCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.04

94.511

0.511
  pilC Acinetobacter baylyi ADP1

50.246

96.897

0.487
  pilC Legionella pneumophila strain ERS1305867

50.627

95.227

0.482
  pilC Acinetobacter baumannii D1279779

49.386

97.136

0.48
  pilG Neisseria gonorrhoeae MS11

43.073

94.749

0.408
  pilG Neisseria meningitidis 44/76-A

42.462

94.988

0.403
  pilC Vibrio cholerae strain A1552

41.379

96.897

0.401
  pilC Vibrio campbellii strain DS40M4

40.399

95.704

0.387
  pilC Thermus thermophilus HB27

36.93

99.523

0.368