Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   K1516_RS17155 Genome accession   NZ_CP080573
Coordinates   3697611..3698984 (+) Length   457 a.a.
NCBI ID   WP_110713353.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain FZD2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3688260..3724766 3697611..3698984 within 0


Gene organization within MGE regions


Location: 3688260..3724766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1516_RS17115 (K1516_17120) - 3688260..3688934 (+) 675 WP_248858193.1 hypothetical protein -
  K1516_RS17120 (K1516_17125) - 3688928..3689941 (+) 1014 WP_248858194.1 hypothetical protein -
  K1516_RS17125 (K1516_17130) - 3689935..3690951 (+) 1017 WP_110713347.1 TraB/GumN family protein -
  K1516_RS17130 (K1516_17135) - 3691270..3691539 (+) 270 WP_110713349.1 hypothetical protein -
  K1516_RS17135 (K1516_17140) - 3691591..3693348 (+) 1758 WP_164162035.1 ABC transporter transmembrane domain-containing protein -
  K1516_RS17140 (K1516_17145) sucD 3693466..3694341 (-) 876 WP_005410793.1 succinate--CoA ligase subunit alpha -
  K1516_RS17145 (K1516_17150) sucC 3694362..3695531 (-) 1170 WP_004154430.1 ADP-forming succinate--CoA ligase subunit beta -
  K1516_RS17150 (K1516_17155) - 3695937..3697550 (+) 1614 WP_164162034.1 ATP-binding protein -
  K1516_RS17155 (K1516_17160) pilR 3697611..3698984 (+) 1374 WP_110713353.1 sigma-54 dependent transcriptional regulator Regulator
  K1516_RS17160 (K1516_17165) pilB 3699111..3700841 (-) 1731 WP_248858195.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K1516_RS17165 (K1516_17170) - 3701057..3701464 (-) 408 WP_180854230.1 pilin -
  K1516_RS17175 (K1516_17175) comP 3701590..3702039 (-) 450 WP_248858196.1 pilin Machinery gene
  K1516_RS17180 (K1516_17180) pilC 3702394..3703653 (+) 1260 WP_153855677.1 type II secretion system F family protein Machinery gene
  K1516_RS17185 (K1516_17185) - 3703662..3704525 (+) 864 WP_010481503.1 A24 family peptidase -
  K1516_RS17190 (K1516_17190) coaE 3704537..3705148 (+) 612 WP_248858197.1 dephospho-CoA kinase -
  K1516_RS17195 (K1516_17195) - 3705278..3705664 (-) 387 WP_248858198.1 hypothetical protein -
  K1516_RS17200 (K1516_17200) - 3706089..3708254 (-) 2166 WP_248858199.1 DUF2235 domain-containing protein -
  K1516_RS17205 (K1516_17205) - 3708251..3708877 (-) 627 WP_248858200.1 DUF3304 domain-containing protein -
  K1516_RS17210 (K1516_17210) - 3708878..3709843 (-) 966 WP_248858202.1 DUF2235 domain-containing protein -
  K1516_RS17215 (K1516_17215) - 3710020..3710646 (-) 627 WP_164162028.1 DUF3304 domain-containing protein -
  K1516_RS17220 (K1516_17220) - 3710647..3711408 (-) 762 WP_343236006.1 DUF2235 domain-containing protein -
  K1516_RS22160 - 3711385..3711675 (+) 291 WP_343236007.1 hypothetical protein -
  K1516_RS17225 (K1516_17230) - 3712039..3712374 (-) 336 WP_248858205.1 hypothetical protein -
  K1516_RS17230 (K1516_17235) - 3712413..3713417 (-) 1005 WP_248858206.1 DUF2235 domain-containing protein -
  K1516_RS17235 (K1516_17240) - 3713591..3714208 (-) 618 WP_248858207.1 DUF3304 domain-containing protein -
  K1516_RS17240 (K1516_17245) - 3714375..3715190 (-) 816 WP_248858208.1 DUF4123 domain-containing protein -
  K1516_RS17245 (K1516_17250) tssI 3715183..3717792 (-) 2610 WP_248858209.1 type VI secretion system Vgr family protein -
  K1516_RS17250 (K1516_17255) - 3718015..3718431 (-) 417 WP_248858210.1 hypothetical protein -
  K1516_RS17255 (K1516_17260) - 3718702..3720072 (-) 1371 WP_110713374.1 HAMP domain-containing sensor histidine kinase -
  K1516_RS17260 (K1516_17265) - 3720035..3720712 (-) 678 WP_005410804.1 response regulator transcription factor -
  K1516_RS17265 (K1516_17270) - 3720725..3721210 (-) 486 WP_110713376.1 hypothetical protein -
  K1516_RS17270 (K1516_17275) rimK 3721496..3722374 (-) 879 WP_110713377.1 30S ribosomal protein S6--L-glutamate ligase -
  K1516_RS17275 (K1516_17280) - 3722504..3722941 (+) 438 WP_180846449.1 thioesterase family protein -
  K1516_RS17280 (K1516_17285) - 3722942..3724096 (-) 1155 WP_248858211.1 hypothetical protein -
  K1516_RS17285 (K1516_17290) - 3724242..3724766 (+) 525 WP_248858212.1 hypothetical protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49457.76 Da        Isoelectric Point: 6.4407

>NTDB_id=594157 K1516_RS17155 WP_110713353.1 3697611..3698984(+) (pilR) [Stenotrophomonas maltophilia strain FZD2]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNAERPAPGPAAEQGARLLGASPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRAPGSAAHAEAV
VDLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=594157 K1516_RS17155 WP_110713353.1 3697611..3698984(+) (pilR) [Stenotrophomonas maltophilia strain FZD2]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGACATCCGCGAACTGCTGGTACTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGGCTGCCGGATGGCAACGGTATCGAGCTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAGGCGCTGAAAGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAACTCAACAACGCCGAACGCCCCGCGCCCGGCCCTGCTG
CCGAACAAGGCGCACGCCTGCTGGGTGCTTCGCCGGCCATGGACGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCACCGGTCTACATCCTCGGCGAATCGGGCGTGGGCAAGGAACTGGTGGCACGCACCATCCACGCCCAGGGCGCACG
TGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGTGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AGGGCAGCTTCAGCGGTGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTGGCCGAACTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGTGCGGTCGGTGCGGC
GAATGAGGAGCCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATTGAACTGAAGGTGCCGCCGCTGCGCGAGCGCCGCCAGGACCTGCCGGAA
CTGGCCGCCGCGGTACTGGCACGCCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCACCCTCGGCACTGGAGGC
GCTGGCGCAGTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTGGAGCGTGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGACGACCTGCGCCTGCCGCAGCACGCCCCGCGCGCGCCCGGCAGCGCAGCGCACGCCGAAGCGGTG
GTGGACCTGCAACCTGGCAGCGCCGCCCTGCCCTCGTACATCGAGCAGCTGGAACGCAGTGCCATCCAGCGCGCATTGGA
AGAGAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGAATTACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(414-454)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.939

99.781

0.628
  pilR Acinetobacter baumannii strain A118

48.38

100

0.49