Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K1T74_RS02455 Genome accession   NZ_CP080462
Coordinates   509284..510510 (-) Length   408 a.a.
NCBI ID   WP_001898157.1    Uniprot ID   -
Organism   Vibrio cholerae strain ICDC-VC702     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 504284..515510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T74_RS02430 parC 504285..506570 (+) 2286 WP_000102515.1 DNA topoisomerase IV subunit A -
  K1T74_RS02435 yacG 506619..506816 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  K1T74_RS02440 zapD 506974..507714 (-) 741 WP_000207194.1 cell division protein ZapD -
  K1T74_RS02445 coaE 507746..508354 (-) 609 WP_220105995.1 dephospho-CoA kinase -
  K1T74_RS02450 pilD 508351..509226 (-) 876 WP_046121365.1 A24 family peptidase Machinery gene
  K1T74_RS02455 pilC 509284..510510 (-) 1227 WP_001898157.1 type II secretion system F family protein Machinery gene
  K1T74_RS02460 pilB 510553..512241 (-) 1689 WP_220105996.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K1T74_RS02465 pilA 512248..512646 (-) 399 WP_142732788.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  K1T74_RS02470 nadC 512891..513781 (-) 891 WP_000665276.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K1T74_RS02475 ampD 514077..514622 (+) 546 WP_088128396.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  K1T74_RS02480 fldB 514772..515290 (-) 519 WP_000690112.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45094.37 Da        Isoelectric Point: 10.3744

>NTDB_id=593043 K1T74_RS02455 WP_001898157.1 509284..510510(-) (pilC) [Vibrio cholerae strain ICDC-VC702]
MKATQTLPLKNYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLVARLTHRVKSKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFG
LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVHRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=593043 K1T74_RS02455 WP_001898157.1 509284..510510(-) (pilC) [Vibrio cholerae strain ICDC-VC702]
ATGAAAGCGACCCAAACCTTACCTCTGAAAAATTATCGCTGGAAAGGCATCAACAGCAACGGCAAAAAAGTTTCCGGCCA
GATGCTCGCCATCTCCGAAATCGAGGTGCGCGATAAGCTCAAAGATCAGCATATTCAGATCAAAAAACTCAAAAAAGGCA
GTGTCTCTTTAGTGGCGCGCCTAACCCATCGCGTGAAAAGCAAAGACATCACGATTTTGACTCGGCAGTTGGCGACCATG
CTCACCACGGGCGTACCCATTGTGCAAGCCCTCAAGTTGGTGGGCGATAATCACCGTAAAGCTGAGATGAAATCGATTCT
GGCGCAAATCACCAAAAGCGTGGAAGCGGGCACGCCGCTTTCCAAGGCGATGCGCACCGCCAGCGCCCATTTTGATACCT
TGTATGTCGACTTAGTGGAAACCGGAGAGATGTCCGGTAACTTACCTGAAGTGTTTGAGCGTTTGGCCACTTACCGCGAG
AAAAGCGAACAGCTACGCGCCAAGGTGATTAAAGCGCTCATCTACCCCAGCATGGTTGTGTTGGTCGCGCTCGGGGTATC
TTACTTAATGCTCACCATGGTCATCCCAGAGTTTGAAAGCATGTTTAAAGGCTTTGGTGCTGAACTGCCTTGGTTTACGC
AGCAAGTGCTGAAACTCTCACACTGGGTACAGGCTTACAGTTTATGGGCATTTATCGCCATCGCCGCGGCCATTTTTGGC
CTGAAAGCGCTGCGTAAAAACTCCTTCCAGATCCGTTTGAAAACCAGTCGCTTGGGGCTGAAATTTCCGATTATTGGCAA
TGTGCTCGCTAAGGCTTCCATCGCCAAATTCAGCCGCACCCTCGCCACCAGCTTTGCCGCGGGGATCCCGATCCTCGCCA
GTTTAAAAACCACTGCCAAAACCTCCGGCAATGTGCACTTTGAAACTGCGATTAATGAAGTACATCGTGATACTGCCGCC
GGTATGCCAATGTACATTGCCATGCGCAATACCGAAGCTTTTCCCGAAATGGTGCTGCAAATGGTGATGATCGGTGAAGA
GTCTGGGCAATTAGACGACATGCTCAATAAGGTCGCGACCATCTATGAATTTGAAGTCGATAACACGGTCGATAACTTGG
GCAAGATTCTTGAACCACTGATCATCGTCTTTCTTGGGACGGTCGTGGGCGGCTTAGTGGTGGCGATGTACTTACCTATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

99.51

100

0.995
  pilC Vibrio campbellii strain DS40M4

73.5

98.039

0.721
  pilC Acinetobacter baumannii D1279779

42.402

100

0.424
  pilC Acinetobacter baylyi ADP1

42.015

99.755

0.419
  pilC Legionella pneumophila strain ERS1305867

42.211

97.549

0.412
  pilC Pseudomonas stutzeri DSM 10701

42.172

97.059

0.409
  pilG Neisseria gonorrhoeae MS11

41.294

98.529

0.407
  pilG Neisseria meningitidis 44/76-A

40.796

98.529

0.402