Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   K1T74_RS02450 Genome accession   NZ_CP080462
Coordinates   508351..509226 (-) Length   291 a.a.
NCBI ID   WP_046121365.1    Uniprot ID   -
Organism   Vibrio cholerae strain ICDC-VC702     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 503351..514226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T74_RS02430 parC 504285..506570 (+) 2286 WP_000102515.1 DNA topoisomerase IV subunit A -
  K1T74_RS02435 yacG 506619..506816 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  K1T74_RS02440 zapD 506974..507714 (-) 741 WP_000207194.1 cell division protein ZapD -
  K1T74_RS02445 coaE 507746..508354 (-) 609 WP_220105995.1 dephospho-CoA kinase -
  K1T74_RS02450 pilD 508351..509226 (-) 876 WP_046121365.1 A24 family peptidase Machinery gene
  K1T74_RS02455 pilC 509284..510510 (-) 1227 WP_001898157.1 type II secretion system F family protein Machinery gene
  K1T74_RS02460 pilB 510553..512241 (-) 1689 WP_220105996.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K1T74_RS02465 pilA 512248..512646 (-) 399 WP_142732788.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  K1T74_RS02470 nadC 512891..513781 (-) 891 WP_000665276.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32433.69 Da        Isoelectric Point: 7.1618

>NTDB_id=593042 K1T74_RS02450 WP_046121365.1 508351..509226(-) (pilD) [Vibrio cholerae strain ICDC-VC702]
MELFYFYPWLFPVLATLFGLIVGSFLNVVIYRLPKIMEREWRAECAASFPEYGITPPEGKLTLSLPRSTCPHCQTPIRVI
DNIPLLSWLALRGQCSHCKAPISARYPLIELLTALMSLVIATHFPFGVFAVALLFFSYVLIAATFIDFDTLLLPDQLTLP
LLWGGIALALLGFSPVSLSDAVIGAMAGYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPVIVLLSSVVGV
IFGLIQLRQQKKGIDMAFPFGPYIAIAGWFALLWGDKVIDWYFTTWVGQPL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=593042 K1T74_RS02450 WP_046121365.1 508351..509226(-) (pilD) [Vibrio cholerae strain ICDC-VC702]
ATGGAACTGTTTTACTTCTACCCTTGGCTGTTTCCGGTGCTCGCCACGCTGTTTGGCTTGATTGTCGGCAGCTTTCTCAA
TGTGGTGATCTATCGCTTACCCAAAATCATGGAGCGTGAATGGCGCGCGGAATGTGCGGCGAGTTTTCCTGAATATGGCA
TCACGCCACCAGAGGGTAAACTGACCCTCAGTTTGCCGCGTTCCACTTGCCCACACTGCCAAACGCCGATTCGCGTCATT
GATAATATCCCGCTACTGAGTTGGCTGGCGCTGCGCGGTCAATGCTCACACTGTAAAGCGCCGATCAGCGCTCGTTATCC
CTTGATTGAGCTACTCACTGCCCTCATGAGCTTAGTGATTGCTACTCACTTTCCGTTCGGGGTGTTTGCCGTGGCGCTGC
TGTTTTTCAGCTATGTATTGATTGCGGCGACCTTCATCGACTTCGATACCCTGTTGCTGCCCGACCAATTAACGCTACCT
TTACTGTGGGGCGGTATTGCGCTGGCACTGCTTGGCTTTTCTCCGGTTTCACTCAGTGATGCGGTGATCGGAGCCATGGC
GGGTTATCTCTCGCTGTGGTCGATTTACTGGCTATTTAAACTGCTGACTGGTAAAGAAGGCATGGGTTATGGCGATTTCA
AATTGCTCGCCGCTCTCGGCGCTTGGCTGGGTTGGCAGCAGTTGCCTGTCATAGTACTGCTCTCATCGGTGGTTGGGGTG
ATTTTCGGTTTAATCCAACTGCGCCAGCAGAAAAAAGGTATCGATATGGCCTTTCCGTTTGGCCCTTATATCGCCATCGC
GGGATGGTTTGCCTTGCTGTGGGGCGATAAGGTAATTGATTGGTACTTCACCACTTGGGTAGGACAACCGCTATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

99.656

100

0.997
  pilD Vibrio campbellii strain DS40M4

75

98.969

0.742
  pilD Acinetobacter nosocomialis M2

54.044

93.471

0.505
  pilD Acinetobacter baumannii D1279779

53.676

93.471

0.502
  pilD Neisseria gonorrhoeae MS11

44.444

98.969

0.44