Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K0I63_RS17750 Genome accession   NZ_CP080420
Coordinates   4104427..4105692 (+) Length   421 a.a.
NCBI ID   WP_220081892.1    Uniprot ID   -
Organism   Shewanella rhizosphaerae strain FJAT-53764     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4099427..4110692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0I63_RS17735 (K0I63_17735) nadC 4100291..4101172 (+) 882 WP_011867231.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K0I63_RS17740 (K0I63_17740) pilA/pilAI 4102096..4102542 (+) 447 WP_220081890.1 pilin Machinery gene
  K0I63_RS17745 (K0I63_17745) pilB 4102630..4104339 (+) 1710 WP_220081891.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K0I63_RS17750 (K0I63_17750) pilC 4104427..4105692 (+) 1266 WP_220081892.1 type II secretion system F family protein Machinery gene
  K0I63_RS17755 (K0I63_17755) pilD 4105732..4106643 (+) 912 WP_220081893.1 A24 family peptidase Machinery gene
  K0I63_RS17760 (K0I63_17760) coaE 4106664..4107269 (+) 606 WP_220081894.1 dephospho-CoA kinase -
  K0I63_RS17765 (K0I63_17765) zapD 4107278..4108012 (+) 735 WP_220081895.1 cell division protein ZapD -
  K0I63_RS17770 (K0I63_17770) yacG 4108061..4108273 (+) 213 WP_041407493.1 DNA gyrase inhibitor YacG -
  K0I63_RS17775 (K0I63_17775) mutT 4108274..4108663 (+) 390 WP_220081896.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45946.09 Da        Isoelectric Point: 10.0024

>NTDB_id=592817 K0I63_RS17750 WP_220081892.1 4104427..4105692(+) (pilC) [Shewanella rhizosphaerae strain FJAT-53764]
MATASLAKTANKKQKAAKAQPKVVTFEWKGINRDGKKTSGELRGTSSAEIKAQLKSQGVNPKVVKKKADPLFKSDPKIKA
MDIAMITRQIATMLAAGVPIVTTLEILGRGHEKPKMRELLSTIVSDVQAGIPLSDSLKPHRQHFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKAEALKSKIKKAMFYPAAVIVVAIAVTTLLLLFVVPQFEEIFAGFGAELPGFTQFIIGISRWLQSSW
YFFIIGLIFFVWGFKRAHLKSENFRNRVDELILKVPVIGDILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNYVY
RTALTKVRSEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGGLDEMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
LVGGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=592817 K0I63_RS17750 WP_220081892.1 4104427..4105692(+) (pilC) [Shewanella rhizosphaerae strain FJAT-53764]
ATGGCAACCGCATCTCTAGCAAAGACGGCAAACAAAAAACAAAAAGCAGCCAAGGCACAACCCAAAGTGGTCACCTTCGA
GTGGAAAGGCATCAACCGCGATGGCAAGAAAACTTCAGGCGAATTAAGAGGTACTTCTTCTGCGGAGATTAAGGCGCAAC
TAAAATCCCAAGGAGTAAACCCTAAGGTCGTCAAGAAAAAAGCAGATCCACTTTTTAAAAGCGACCCTAAGATCAAGGCG
ATGGATATCGCCATGATCACCCGTCAGATAGCGACCATGCTGGCAGCAGGTGTGCCTATTGTTACTACGCTAGAAATTTT
AGGTCGGGGCCACGAAAAACCTAAAATGAGAGAGCTATTAAGTACAATTGTTAGTGATGTACAGGCAGGCATTCCCTTAT
CTGACTCACTAAAACCCCACAGACAGCATTTCGATGATCTCTATGTCGATTTAGTTGCCGCTGGCGAGCACTCAGGTTCG
CTGGATGCTGTTTTCGACAGAATTGCGACCTATAGAGAAAAGGCTGAAGCTTTAAAATCAAAAATCAAGAAAGCTATGTT
CTATCCCGCTGCTGTAATAGTCGTCGCCATAGCCGTTACAACTTTATTACTTCTTTTTGTAGTTCCTCAGTTCGAAGAAA
TATTCGCAGGCTTTGGTGCAGAGTTACCGGGCTTTACGCAATTCATTATTGGTATCTCACGCTGGCTTCAATCCTCTTGG
TATTTTTTTATAATAGGGTTGATCTTTTTCGTTTGGGGATTTAAAAGAGCCCATTTAAAATCAGAGAATTTTCGAAACAG
AGTTGACGAGCTAATCTTAAAAGTACCAGTCATTGGTGACATTCTTCACAAAGCAGCAATGGCACGCTTCGCTAGAACGT
TAGCAACAACTTTTGCTGCCGGGGTGCCACTAATTGACGGACTAGAGTCTGCAGCAGGAGCCTCAGGTAACTATGTCTAT
CGGACAGCACTAACTAAAGTGAGAAGCGAGGTCATGTCAGGCATGCAGATGAATGTTGCTATGCGCACCACAGGGTTATT
CCCCGATATGCTGATTCAGATGGTAATGATAGGCGAAGAATCAGGTGGTTTAGATGAGATGCTTAATAAAGTTGCCAACA
TCTATGAGATGCAGGTCGATGATGCCGTCGATGGGCTCTCTAGTCTTATCGAACCTATCATGATGGTGGTGATTGGTACA
CTCGTCGGTGGTCTCATCGTTGGTATGTATCTACCAATCTTCCAAATGGGTAACGTGGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.975

93.824

0.544
  pilC Acinetobacter baumannii D1279779

50

97.387

0.487
  pilC Acinetobacter baylyi ADP1

49.386

96.675

0.477
  pilC Legionella pneumophila strain ERS1305867

49.752

95.962

0.477
  pilC Vibrio cholerae strain A1552

47.059

96.912

0.456
  pilC Vibrio campbellii strain DS40M4

44.527

95.487

0.425
  pilG Neisseria gonorrhoeae MS11

42.222

96.2

0.406
  pilG Neisseria meningitidis 44/76-A

41.728

96.2

0.401