Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   K0I63_RS17755 Genome accession   NZ_CP080420
Coordinates   4105732..4106643 (+) Length   303 a.a.
NCBI ID   WP_220081893.1    Uniprot ID   -
Organism   Shewanella rhizosphaerae strain FJAT-53764     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4100732..4111643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0I63_RS17740 (K0I63_17740) pilA/pilAI 4102096..4102542 (+) 447 WP_220081890.1 pilin Machinery gene
  K0I63_RS17745 (K0I63_17745) pilB 4102630..4104339 (+) 1710 WP_220081891.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K0I63_RS17750 (K0I63_17750) pilC 4104427..4105692 (+) 1266 WP_220081892.1 type II secretion system F family protein Machinery gene
  K0I63_RS17755 (K0I63_17755) pilD 4105732..4106643 (+) 912 WP_220081893.1 A24 family peptidase Machinery gene
  K0I63_RS17760 (K0I63_17760) coaE 4106664..4107269 (+) 606 WP_220081894.1 dephospho-CoA kinase -
  K0I63_RS17765 (K0I63_17765) zapD 4107278..4108012 (+) 735 WP_220081895.1 cell division protein ZapD -
  K0I63_RS17770 (K0I63_17770) yacG 4108061..4108273 (+) 213 WP_041407493.1 DNA gyrase inhibitor YacG -
  K0I63_RS17775 (K0I63_17775) mutT 4108274..4108663 (+) 390 WP_220081896.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 33739.01 Da        Isoelectric Point: 6.4722

>NTDB_id=592818 K0I63_RS17755 WP_220081893.1 4105732..4106643(+) (pilD) [Shewanella rhizosphaerae strain FJAT-53764]
MTEFIQLMAQYPLLFAAISFVFASTIGSFLNVVIHRLPVMMKREWQLECNQYLDEYHNETVAEIKDKLAQPIDDYPEKYN
LVVPGSACPKCKTSIKPWHNLPIFGWLMLGGKCANCKTNISARYPIIEIITGLAVAYLAYHFGPTWQFVFATILTFGLVA
LTGIDLDEMLLPDQITLPLLWIGLLISLNGTFVSITDAVIGASAGYMSLWSVFWGFKILTGKEGMGYGDFKLLAVFGAWF
GWQLLPLIILLSSIVGALVGLLLIVNKKINSGNPIPFGPYIALAGWIAMIWGEKIVNWYLSTL

Nucleotide


Download         Length: 912 bp        

>NTDB_id=592818 K0I63_RS17755 WP_220081893.1 4105732..4106643(+) (pilD) [Shewanella rhizosphaerae strain FJAT-53764]
ATGACTGAATTTATCCAATTAATGGCTCAGTACCCTTTGCTGTTTGCCGCAATTTCCTTTGTCTTCGCATCTACAATTGG
CAGTTTTTTAAACGTAGTGATTCATCGCCTTCCAGTGATGATGAAAAGAGAGTGGCAGCTAGAATGTAACCAATATCTCG
ATGAATACCACAACGAAACCGTTGCGGAGATTAAAGATAAATTAGCTCAGCCGATCGATGACTATCCAGAAAAATACAAT
CTTGTGGTACCTGGCTCTGCCTGCCCAAAATGTAAAACAAGCATAAAGCCTTGGCACAACTTGCCCATTTTTGGTTGGTT
AATGCTCGGTGGTAAATGCGCTAACTGCAAAACTAACATATCTGCCAGATACCCTATTATTGAGATTATTACAGGGCTGG
CGGTTGCCTATCTGGCCTACCATTTTGGCCCAACGTGGCAATTTGTCTTTGCCACCATTCTGACCTTTGGCCTGGTAGCC
TTAACAGGGATAGATCTCGATGAAATGCTGCTGCCGGATCAGATCACTTTGCCACTCTTATGGATTGGCCTACTTATAAG
TCTAAATGGCACCTTTGTCTCGATTACAGATGCGGTCATTGGTGCTTCTGCGGGTTATATGAGCCTTTGGAGCGTGTTCT
GGGGATTCAAAATACTAACCGGCAAGGAAGGTATGGGTTATGGCGACTTTAAGCTATTAGCCGTATTCGGCGCCTGGTTT
GGCTGGCAATTATTGCCACTCATCATCCTGTTATCCTCCATTGTTGGCGCACTAGTTGGCTTGCTACTCATCGTCAATAA
GAAGATCAATTCTGGCAATCCCATACCATTTGGCCCTTATATCGCCTTAGCAGGCTGGATTGCCATGATTTGGGGTGAGA
AGATAGTAAATTGGTACCTATCTACCTTATAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(154-261)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

49.333

99.01

0.488
  pilD Vibrio campbellii strain DS40M4

48.667

99.01

0.482
  pilD Acinetobacter nosocomialis M2

47.387

94.719

0.449
  pilD Acinetobacter baumannii D1279779

47.038

94.719

0.446
  pilD Neisseria gonorrhoeae MS11

43.571

92.409

0.403