Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | KZW86_RS05825 | Genome accession | NZ_CP080249 |
| Coordinates | 1161203..1161631 (+) | Length | 142 a.a. |
| NCBI ID | WP_031795050.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain NV_1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1152779..1196607 | 1161203..1161631 | within | 0 |
Gene organization within MGE regions
Location: 1152779..1196607
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZW86_RS05750 (KZW86_05710) | - | 1152779..1154164 (-) | 1386 | WP_000861313.1 | recombinase family protein | - |
| KZW86_RS05755 (KZW86_05715) | - | 1154371..1155051 (-) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| KZW86_RS05760 (KZW86_05720) | - | 1155083..1155808 (-) | 726 | WP_070051785.1 | PH domain-containing protein | - |
| KZW86_RS05765 (KZW86_05725) | - | 1155864..1156490 (-) | 627 | WP_078101110.1 | XRE family transcriptional regulator | - |
| KZW86_RS05770 (KZW86_05730) | - | 1156688..1156903 (+) | 216 | WP_070051787.1 | transcriptional regulator | - |
| KZW86_RS05775 (KZW86_05735) | - | 1156919..1157080 (+) | 162 | WP_172972928.1 | hypothetical protein | - |
| KZW86_RS05780 (KZW86_05740) | - | 1157085..1157348 (-) | 264 | WP_014533247.1 | CRISPR-associated protein Cas2 | - |
| KZW86_RS05785 (KZW86_05745) | - | 1157792..1157977 (+) | 186 | WP_238565730.1 | helix-turn-helix transcriptional regulator | - |
| KZW86_RS05790 (KZW86_05750) | - | 1157979..1158731 (+) | 753 | WP_001148607.1 | phage antirepressor KilAC domain-containing protein | - |
| KZW86_RS05795 (KZW86_05755) | - | 1158924..1159154 (-) | 231 | WP_000395457.1 | hypothetical protein | - |
| KZW86_RS05800 (KZW86_05760) | - | 1159334..1159495 (+) | 162 | WP_153906701.1 | DUF1270 domain-containing protein | - |
| KZW86_RS05805 (KZW86_05765) | - | 1159589..1159849 (+) | 261 | WP_153906700.1 | DUF1108 family protein | - |
| KZW86_RS05810 (KZW86_05770) | - | 1159857..1160093 (+) | 237 | WP_000802315.1 | hypothetical protein | - |
| KZW86_RS05815 (KZW86_05775) | - | 1160086..1160565 (+) | 480 | WP_000002513.1 | siphovirus Gp157 family protein | - |
| KZW86_RS05820 (KZW86_05780) | - | 1160565..1161203 (+) | 639 | WP_001043061.1 | ERF family protein | - |
| KZW86_RS05825 (KZW86_05785) | ssbA | 1161203..1161631 (+) | 429 | WP_031795050.1 | single-stranded DNA-binding protein | Machinery gene |
| KZW86_RS05830 (KZW86_05790) | - | 1161645..1162319 (+) | 675 | WP_031795051.1 | putative HNHc nuclease | - |
| KZW86_RS05835 (KZW86_05795) | - | 1162429..1163088 (-) | 660 | WP_016028252.1 | hypothetical protein | - |
| KZW86_RS05840 (KZW86_05800) | - | 1163134..1163904 (+) | 771 | WP_000190226.1 | conserved phage C-terminal domain-containing protein | - |
| KZW86_RS05845 (KZW86_05805) | - | 1163914..1164687 (+) | 774 | WP_000803028.1 | ATP-binding protein | - |
| KZW86_RS05850 (KZW86_05810) | - | 1164681..1164839 (+) | 159 | WP_000256589.1 | hypothetical protein | - |
| KZW86_RS05855 (KZW86_05815) | - | 1164852..1165073 (+) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| KZW86_RS05860 (KZW86_05820) | - | 1165083..1165622 (+) | 540 | WP_234769214.1 | RusA family crossover junction endodeoxyribonuclease | - |
| KZW86_RS05865 (KZW86_05825) | - | 1165622..1165807 (+) | 186 | WP_001187261.1 | DUF3113 family protein | - |
| KZW86_RS05870 (KZW86_05830) | - | 1165808..1166113 (+) | 306 | WP_000101252.1 | hypothetical protein | - |
| KZW86_RS05875 (KZW86_05835) | - | 1166241..1166600 (+) | 360 | WP_234769215.1 | SA1788 family PVL leukocidin-associated protein | - |
| KZW86_RS05880 (KZW86_05840) | - | 1166601..1166849 (+) | 249 | WP_234769216.1 | SAV1978 family virulence-associated passenger protein | - |
| KZW86_RS05885 (KZW86_05845) | - | 1166864..1167295 (+) | 432 | WP_153906698.1 | hypothetical protein | - |
| KZW86_RS05890 (KZW86_05850) | - | 1167295..1167570 (+) | 276 | WP_153906697.1 | hypothetical protein | - |
| KZW86_RS05895 (KZW86_05855) | - | 1167563..1167810 (+) | 248 | Protein_1152 | DUF1024 family protein | - |
| KZW86_RS05900 (KZW86_05860) | - | 1167803..1168339 (+) | 537 | WP_000185696.1 | dUTPase | - |
| KZW86_RS05905 (KZW86_05865) | - | 1168376..1168582 (+) | 207 | WP_238565731.1 | DUF1381 domain-containing protein | - |
| KZW86_RS05910 (KZW86_05870) | - | 1168579..1168962 (+) | 384 | WP_000592223.1 | hypothetical protein | - |
| KZW86_RS05915 (KZW86_05875) | - | 1168962..1169135 (+) | 174 | WP_234769205.1 | transcriptional activator RinB | - |
| KZW86_RS05920 (KZW86_05880) | - | 1169136..1169282 (+) | 147 | WP_000990001.1 | hypothetical protein | - |
| KZW86_RS05925 (KZW86_05885) | - | 1169306..1169728 (+) | 423 | WP_000162696.1 | RinA family phage transcriptional activator | - |
| KZW86_RS05930 (KZW86_05890) | - | 1169916..1170410 (+) | 495 | WP_114305789.1 | terminase small subunit | - |
| KZW86_RS05935 (KZW86_05895) | - | 1170413..1171702 (+) | 1290 | WP_114305774.1 | PBSX family phage terminase large subunit | - |
| KZW86_RS05940 (KZW86_05900) | - | 1171721..1173259 (+) | 1539 | WP_234769204.1 | phage portal protein | - |
| KZW86_RS05945 (KZW86_05905) | - | 1173266..1174261 (+) | 996 | WP_001133044.1 | minor capsid protein | - |
| KZW86_RS05950 (KZW86_05910) | - | 1174334..1174504 (+) | 171 | WP_000072208.1 | hypothetical protein | - |
| KZW86_RS05955 | - | 1174532..1174625 (+) | 94 | Protein_1164 | hypothetical protein | - |
| KZW86_RS05960 (KZW86_05915) | - | 1174613..1175233 (+) | 621 | WP_063663447.1 | DUF4355 domain-containing protein | - |
| KZW86_RS05965 (KZW86_05920) | - | 1175247..1176221 (+) | 975 | WP_000438512.1 | phage major capsid protein | - |
| KZW86_RS05970 (KZW86_05925) | - | 1176243..1176530 (+) | 288 | WP_031771475.1 | hypothetical protein | - |
| KZW86_RS05975 (KZW86_05930) | - | 1176539..1176871 (+) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| KZW86_RS05980 (KZW86_05935) | - | 1176868..1177170 (+) | 303 | WP_001268312.1 | hypothetical protein | - |
| KZW86_RS05985 (KZW86_05940) | - | 1177170..1177517 (+) | 348 | WP_001017815.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| KZW86_RS05990 (KZW86_05945) | - | 1177529..1177912 (+) | 384 | WP_000188643.1 | hypothetical protein | - |
| KZW86_RS05995 (KZW86_05950) | - | 1177931..1178512 (+) | 582 | WP_000002577.1 | phage major tail protein, TP901-1 family | - |
| KZW86_RS06000 (KZW86_05955) | - | 1178574..1178939 (+) | 366 | WP_001100161.1 | tail assembly chaperone | - |
| KZW86_RS06005 (KZW86_05960) | - | 1178969..1179313 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| KZW86_RS06010 (KZW86_05965) | - | 1179330..1182797 (+) | 3468 | WP_234769203.1 | hypothetical protein | - |
| KZW86_RS06015 (KZW86_05970) | - | 1182810..1183757 (+) | 948 | WP_000350675.1 | phage tail family protein | - |
| KZW86_RS06020 (KZW86_05975) | - | 1183766..1185667 (+) | 1902 | WP_234769202.1 | SGNH/GDSL hydrolase family protein | - |
| KZW86_RS06025 (KZW86_05980) | - | 1185682..1187592 (+) | 1911 | WP_000066423.1 | hypothetical protein | - |
| KZW86_RS06030 (KZW86_05985) | - | 1187592..1189415 (+) | 1824 | WP_000259596.1 | phage baseplate upper protein | - |
| KZW86_RS06035 (KZW86_05990) | - | 1189415..1189792 (+) | 378 | WP_000705902.1 | DUF2977 domain-containing protein | - |
| KZW86_RS06040 (KZW86_05995) | - | 1189796..1189969 (+) | 174 | WP_001800921.1 | XkdX family protein | - |
| KZW86_RS06045 (KZW86_06000) | - | 1190010..1190309 (+) | 300 | WP_234769201.1 | DUF2951 domain-containing protein | - |
| KZW86_RS06050 (KZW86_06005) | - | 1190446..1192338 (+) | 1893 | WP_156808413.1 | glucosaminidase domain-containing protein | - |
| KZW86_RS06055 (KZW86_06010) | - | 1192351..1193523 (+) | 1173 | WP_000276624.1 | BppU family phage baseplate upper protein | - |
| KZW86_RS06060 (KZW86_06015) | - | 1193529..1193924 (+) | 396 | WP_000398882.1 | hypothetical protein | - |
| KZW86_RS06065 (KZW86_06020) | - | 1193981..1194418 (+) | 438 | WP_000354135.1 | phage holin | - |
| KZW86_RS06070 (KZW86_06025) | - | 1194399..1195844 (+) | 1446 | WP_001148142.1 | SH3 domain-containing protein | - |
| KZW86_RS06075 (KZW86_06030) | - | 1196087..1196239 (+) | 153 | WP_001788502.1 | hypothetical protein | - |
| KZW86_RS06080 (KZW86_06035) | - | 1196310..1196420 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| KZW86_RS06085 (KZW86_06040) | - | 1196422..1196607 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 16047.63 Da Isoelectric Point: 5.8698
>NTDB_id=591663 KZW86_RS05825 WP_031795050.1 1161203..1161631(+) (ssbA) [Staphylococcus aureus strain NV_1]
MLNRVVLVGRLTKDPEFRTTPNGVSVATFTLAVNRTFTNAQGEREADFINCVTFRKQADNVNNYLSKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
MLNRVVLVGRLTKDPEFRTTPNGVSVATFTLAVNRTFTNAQGEREADFINCVTFRKQADNVNNYLSKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
Nucleotide
Download Length: 429 bp
>NTDB_id=591663 KZW86_RS05825 WP_031795050.1 1161203..1161631(+) (ssbA) [Staphylococcus aureus strain NV_1]
ATGTTAAACAGAGTAGTTTTAGTAGGACGCTTAACAAAAGACCCAGAATTCAGAACAACGCCAAACGGTGTAAGTGTAGC
TACTTTCACTCTTGCAGTCAATAGAACATTCACAAACGCACAAGGAGAACGTGAGGCAGATTTTATTAATTGTGTAACTT
TTAGAAAACAAGCAGATAACGTGAATAACTATTTATCAAAAGGATCATTAGCTGGTGTTGACGGACGCCTACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTGTATTCGTTACCGAAGTTGTATGTGACAGTGTCCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
ATGTTAAACAGAGTAGTTTTAGTAGGACGCTTAACAAAAGACCCAGAATTCAGAACAACGCCAAACGGTGTAAGTGTAGC
TACTTTCACTCTTGCAGTCAATAGAACATTCACAAACGCACAAGGAGAACGTGAGGCAGATTTTATTAATTGTGTAACTT
TTAGAAAACAAGCAGATAACGTGAATAACTATTTATCAAAAGGATCATTAGCTGGTGTTGACGGACGCCTACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTGTATTCGTTACCGAAGTTGTATGTGACAGTGTCCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.302 |
100 |
0.718 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.606 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
74.648 |
0.451 |
| ssbA | Streptococcus mutans UA159 |
40.141 |
100 |
0.401 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
39.86 |
100 |
0.401 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
39.437 |
100 |
0.394 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
39.437 |
100 |
0.394 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
38.732 |
100 |
0.387 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
38.732 |
100 |
0.387 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
38.732 |
100 |
0.387 |
| ssbB/cilA | Streptococcus mitis SK321 |
38.732 |
100 |
0.387 |