Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ITG12_RS12765 Genome accession   NZ_CP080238
Coordinates   2746036..2747787 (+) Length   583 a.a.
NCBI ID   WP_045405855.1    Uniprot ID   -
Organism   Vibrio sp. ED002     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2741036..2752787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG12_RS12745 (ITG12_12665) pilM 2743344..2744360 (+) 1017 WP_248873119.1 type IV pilus assembly protein PilM Machinery gene
  ITG12_RS12750 (ITG12_12670) pilN 2744344..2744910 (+) 567 WP_038865500.1 PilN domain-containing protein Machinery gene
  ITG12_RS12755 (ITG12_12675) pilO 2744903..2745496 (+) 594 WP_038865498.1 type 4a pilus biogenesis protein PilO Machinery gene
  ITG12_RS12760 (ITG12_12680) pilP 2745486..2746001 (+) 516 WP_038865496.1 pilus assembly protein PilP Machinery gene
  ITG12_RS12765 (ITG12_12685) pilQ 2746036..2747787 (+) 1752 WP_045405855.1 type IV pilus secretin PilQ family protein Machinery gene
  ITG12_RS12770 (ITG12_12690) aroK 2747976..2748494 (+) 519 WP_038865492.1 shikimate kinase AroK -
  ITG12_RS12775 (ITG12_12695) aroB 2748526..2749626 (+) 1101 WP_248873120.1 3-dehydroquinate synthase -
  ITG12_RS12780 (ITG12_12700) - 2749679..2751178 (+) 1500 WP_248873121.1 AAA family ATPase -
  ITG12_RS12785 (ITG12_12705) - 2751248..2752087 (+) 840 WP_042602609.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 63968.01 Da        Isoelectric Point: 4.5265

>NTDB_id=591575 ITG12_RS12765 WP_045405855.1 2746036..2747787(+) (pilQ) [Vibrio sp. ED002]
MKMRQGLTRIPRKLIGLFSFWLFLFLAPFAVANEVQSNAFKSIDFRTNKDKDAVIVVELASPAAIVDIKRVQEGLSIDLL
NTSVKDDQLYLLDVKDFSTVVESVEIFRDTSTTRLVAYIDEDYTHDYRLTGRYLEVKVGKLKPNEKVPDKSILEKEGKLI
SINFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKDELDLREKQQ
LEKQKLEQEMGDLSSEIIKVNFAKASDIAEMINGEGNISMLSDRGSMTIDERTNSLLIRELPSNIEVIREIIESLDIPVK
QVQIEARIVTINEGNMDELGVRWGFTSINGSHTVGGSIENNLATIGLYDGGGGDGEGEDGGGSVGIDDFLNVNLAATSPN
ATSLAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVTFKKAVLSLKVTP
QITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALF
RRSYENVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=591575 ITG12_RS12765 WP_045405855.1 2746036..2747787(+) (pilQ) [Vibrio sp. ED002]
ATGAAAATGAGACAAGGATTAACACGTATACCAAGGAAGCTAATAGGGCTCTTCTCTTTTTGGTTGTTTTTATTTTTAGC
CCCTTTCGCAGTCGCGAACGAAGTTCAGTCTAATGCCTTCAAAAGCATTGATTTCCGTACCAATAAAGACAAAGACGCGG
TGATTGTGGTTGAGCTTGCTTCGCCTGCTGCCATTGTGGACATCAAGCGCGTGCAAGAAGGCTTGAGTATCGATTTGCTC
AATACGTCAGTTAAAGATGATCAGCTTTATCTTCTTGATGTAAAAGACTTCTCTACCGTAGTGGAAAGTGTCGAGATATT
TCGTGATACCTCGACAACGCGCCTCGTGGCTTATATTGATGAAGACTATACCCATGATTACCGTCTGACAGGGCGATACT
TGGAAGTTAAAGTGGGCAAGCTCAAGCCGAACGAAAAGGTGCCAGACAAAAGTATTCTGGAAAAAGAAGGCAAGTTGATT
TCGATTAACTTCCAAGACATTCCAGTGCGTAACGTTCTGCAACTTATCGCGGATTATAACCAGTTCAACTTAGTTGTTTC
TGACTCAGTAGAAGGCAATCTTACATTGCGTCTTGACGGTGTGCCTTGGCAGCAAGTACTCGATATCATTCTGCAAGTAA
AAGGCTTAGACAAACGCGTGGATGGCAACGTTATTCTGGTCGCACCAAAAGATGAGCTGGACTTGCGTGAGAAGCAGCAG
TTAGAGAAGCAGAAGCTTGAGCAAGAGATGGGAGATCTTTCTTCGGAGATCATCAAAGTGAACTTTGCGAAAGCCTCTGA
TATCGCAGAGATGATCAATGGTGAAGGTAATATCAGCATGTTGTCGGACCGCGGCAGTATGACGATTGATGAACGCACCA
ATTCTCTGCTGATTCGAGAGCTTCCTAGTAACATTGAAGTGATTCGTGAAATCATAGAGTCTCTCGATATTCCAGTGAAA
CAGGTTCAAATTGAAGCGCGTATCGTTACCATCAATGAAGGTAATATGGACGAGCTGGGTGTTCGTTGGGGCTTTACTTC
TATTAATGGTAGTCACACGGTGGGGGGTTCTATCGAGAACAACCTTGCCACTATCGGCCTTTACGATGGCGGCGGTGGTG
ACGGCGAAGGTGAAGACGGTGGTGGTAGTGTCGGTATCGATGACTTCCTTAACGTCAACTTGGCAGCAACCAGTCCAAAT
GCAACCAGCCTTGCCTTTCAAGTGGCTAAGCTAGGTTCTGACACCTTGTTGGATTTAGAGTTGTCTGCACTACAACAAGA
ATCAAAAGCTGAAATCATTTCAAGTCCACGTCTCATTACCACTAACAAAAAACCGGCCTATATAGAGCAAGGTACAGAGA
TCCCTTATTTAGAGTCGTCATCCAGTGGTGCAACTTCTGTGACCTTTAAAAAAGCCGTGCTTAGTTTGAAGGTGACACCG
CAGATTACTCCTGACAACCGTTTGGTGTTGGATTTAAGTGTTACGCAAGATAGACCAGGGCAAGTGGTAAAAACGGGCAC
TGGTGAGGCGGTAGCGATCGATACTCAACGTATTGGTACTCAAGTGTTAGTGAATAACGGAGAGACCGTCGTACTCGGTG
GTATTTTCCAACATAGTATTACCAACTCCGTCGATAAGGTGCCTTTATTAGGTGATTTACCGCTGTTAGGAGCGCTTTTC
CGCCGAAGTTACGAAAATGTAGGCAAAAGTGAGTTGTTGATTTTTGTTACACCGAAGGTCGTTATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(423-581)

Bacterial type II/III secretion system short domain (Secretin_N)

(256-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

94.683

100

0.947
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

76.45

97.599

0.746
  pilQ Vibrio cholerae strain A1552

76.45

97.599

0.746
  pilQ Legionella pneumophila strain ERS1305867

41.273

94.34

0.389
  pilQ Legionella pneumophila strain Lp02

41.273

94.34

0.389
  pilQ Pseudomonas aeruginosa PAK

39.685

98.113

0.389
  comQ Acinetobacter baylyi ADP1

36.986

100

0.37
  pilQ Acinetobacter baumannii strain A118

36.088

100

0.367
  pilQ Acinetobacter baumannii D1279779

36.088

100

0.367