Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | KZW87_RS04505 | Genome accession | NZ_CP080222 |
| Coordinates | 910979..911407 (+) | Length | 142 a.a. |
| NCBI ID | WP_031795050.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain NT_8 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 900363..944034 | 910979..911407 | within | 0 |
Gene organization within MGE regions
Location: 900363..944034
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZW87_RS04410 (KZW87_04395) | sufB | 900363..901760 (+) | 1398 | WP_001074405.1 | Fe-S cluster assembly protein SufB | - |
| KZW87_RS04415 (KZW87_04400) | - | 901828..902877 (-) | 1050 | WP_001145731.1 | tyrosine-type recombinase/integrase | - |
| KZW87_RS04420 (KZW87_04405) | - | 902938..904596 (-) | 1659 | WP_017431789.1 | DpnII family type II restriction endonuclease | - |
| KZW87_RS04425 (KZW87_04410) | - | 904688..904873 (-) | 186 | WP_234722733.1 | hypothetical protein | - |
| KZW87_RS04430 (KZW87_04415) | - | 904870..905016 (-) | 147 | WP_001049401.1 | hypothetical protein | - |
| KZW87_RS04435 (KZW87_04420) | - | 905028..905744 (-) | 717 | WP_217659479.1 | LexA family transcriptional regulator | - |
| KZW87_RS04440 (KZW87_04425) | - | 905908..906150 (+) | 243 | WP_234722734.1 | DUF739 family protein | - |
| KZW87_RS04445 (KZW87_04430) | - | 906166..906345 (+) | 180 | WP_234722735.1 | hypothetical protein | - |
| KZW87_RS04450 (KZW87_04435) | - | 906446..906928 (-) | 483 | WP_217659478.1 | hypothetical protein | - |
| KZW87_RS04455 (KZW87_04440) | - | 907373..907558 (+) | 186 | WP_000933363.1 | helix-turn-helix transcriptional regulator | - |
| KZW87_RS04460 (KZW87_04445) | - | 907560..908312 (+) | 753 | WP_001148595.1 | phage antirepressor KilAC domain-containing protein | - |
| KZW87_RS04465 (KZW87_04450) | - | 908353..908643 (+) | 291 | WP_000405222.1 | hypothetical protein | - |
| KZW87_RS04470 (KZW87_04455) | - | 908655..908825 (-) | 171 | WP_000224747.1 | hypothetical protein | - |
| KZW87_RS04475 (KZW87_04460) | - | 908896..909117 (+) | 222 | WP_000594794.1 | hypothetical protein | - |
| KZW87_RS04480 (KZW87_04465) | - | 909110..909271 (+) | 162 | WP_000048127.1 | DUF1270 family protein | - |
| KZW87_RS04485 (KZW87_04470) | - | 909365..909625 (+) | 261 | WP_000291075.1 | DUF1108 family protein | - |
| KZW87_RS04490 (KZW87_04475) | - | 909633..909869 (+) | 237 | WP_031900924.1 | hypothetical protein | - |
| KZW87_RS04495 (KZW87_04480) | - | 909862..910341 (+) | 480 | WP_000002513.1 | siphovirus Gp157 family protein | - |
| KZW87_RS04500 (KZW87_04485) | - | 910341..910979 (+) | 639 | WP_001043061.1 | ERF family protein | - |
| KZW87_RS04505 (KZW87_04490) | ssbA | 910979..911407 (+) | 429 | WP_031795050.1 | single-stranded DNA-binding protein | Machinery gene |
| KZW87_RS04510 (KZW87_04495) | - | 911421..912095 (+) | 675 | WP_031795051.1 | putative HNHc nuclease | - |
| KZW87_RS04515 (KZW87_04500) | - | 912205..912864 (-) | 660 | WP_016028252.1 | hypothetical protein | - |
| KZW87_RS04520 (KZW87_04505) | - | 912910..913680 (+) | 771 | WP_234722725.1 | conserved phage C-terminal domain-containing protein | - |
| KZW87_RS04525 (KZW87_04510) | - | 913690..914463 (+) | 774 | WP_000803028.1 | ATP-binding protein | - |
| KZW87_RS04530 (KZW87_04515) | - | 914457..914615 (+) | 159 | WP_000256597.1 | hypothetical protein | - |
| KZW87_RS04535 (KZW87_04520) | - | 914629..914850 (+) | 222 | WP_001123681.1 | DUF3269 family protein | - |
| KZW87_RS04540 (KZW87_04525) | - | 914861..915265 (+) | 405 | WP_031794904.1 | DUF1064 domain-containing protein | - |
| KZW87_RS04545 (KZW87_04530) | - | 915270..915455 (+) | 186 | WP_031880123.1 | DUF3113 family protein | - |
| KZW87_RS04550 (KZW87_04535) | - | 915456..915827 (+) | 372 | WP_114304737.1 | SA1788 family PVL leukocidin-associated protein | - |
| KZW87_RS04555 (KZW87_04540) | - | 915828..916076 (+) | 249 | WP_170172336.1 | phi PVL orf 51-like protein | - |
| KZW87_RS04560 (KZW87_04545) | - | 916091..916339 (+) | 249 | WP_001065055.1 | DUF1024 family protein | - |
| KZW87_RS04565 (KZW87_04550) | - | 916332..916865 (+) | 534 | WP_000185661.1 | dUTP pyrophosphatase | - |
| KZW87_RS04570 (KZW87_04555) | - | 916902..917147 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| KZW87_RS04575 (KZW87_04560) | - | 917144..917350 (+) | 207 | WP_000195771.1 | DUF1381 domain-containing protein | - |
| KZW87_RS04580 (KZW87_04565) | - | 917347..917733 (+) | 387 | WP_000592220.1 | hypothetical protein | - |
| KZW87_RS04585 (KZW87_04570) | - | 917730..917903 (+) | 174 | WP_017804565.1 | transcriptional activator RinB | - |
| KZW87_RS04590 (KZW87_04575) | - | 917904..918305 (+) | 402 | WP_000286967.1 | hypothetical protein | - |
| KZW87_RS04595 (KZW87_04580) | - | 918683..919177 (+) | 495 | WP_000594090.1 | terminase small subunit | - |
| KZW87_RS04600 (KZW87_04585) | - | 919170..919538 (+) | 369 | Protein_901 | PBSX family phage terminase large subunit | - |
| KZW87_RS04605 (KZW87_04590) | - | 919658..920497 (+) | 840 | WP_114306617.1 | NUMOD3 domain-containing DNA-binding protein | - |
| KZW87_RS04610 (KZW87_04595) | - | 920693..921547 (+) | 855 | Protein_903 | PBSX family phage terminase large subunit | - |
| KZW87_RS04615 (KZW87_04600) | - | 921544..922968 (+) | 1425 | WP_050482218.1 | phage portal protein | - |
| KZW87_RS04620 (KZW87_04605) | - | 922937..923887 (+) | 951 | WP_000184140.1 | phage head morphogenesis protein | - |
| KZW87_RS04625 (KZW87_04610) | - | 923891..924124 (+) | 234 | WP_000440857.1 | hypothetical protein | - |
| KZW87_RS04630 (KZW87_04615) | - | 924228..924812 (+) | 585 | WP_001019222.1 | DUF4355 domain-containing protein | - |
| KZW87_RS04635 (KZW87_04620) | - | 924829..925743 (+) | 915 | WP_000235170.1 | phage major capsid protein | - |
| KZW87_RS04640 (KZW87_04625) | - | 925755..925898 (+) | 144 | WP_000002930.1 | hypothetical protein | - |
| KZW87_RS04645 (KZW87_04630) | - | 925904..926254 (+) | 351 | WP_000177353.1 | phage head-tail adapter protein | - |
| KZW87_RS04650 (KZW87_04635) | - | 926266..926601 (+) | 336 | WP_000483043.1 | phage head closure protein | - |
| KZW87_RS04655 (KZW87_04640) | - | 926588..927001 (+) | 414 | WP_001151327.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| KZW87_RS04660 (KZW87_04645) | - | 927014..927439 (+) | 426 | WP_000270186.1 | DUF3168 domain-containing protein | - |
| KZW87_RS04665 (KZW87_04650) | - | 927440..927997 (+) | 558 | WP_000057585.1 | hypothetical protein | - |
| KZW87_RS04670 (KZW87_04655) | - | 928064..928576 (+) | 513 | WP_234722726.1 | tail assembly chaperone | - |
| KZW87_RS04675 | - | 928756..928905 (+) | 150 | WP_000090305.1 | hypothetical protein | - |
| KZW87_RS04680 (KZW87_04665) | - | 928909..931794 (+) | 2886 | WP_000379436.1 | hypothetical protein | - |
| KZW87_RS04685 (KZW87_04670) | - | 931809..932750 (+) | 942 | WP_000560186.1 | phage tail domain-containing protein | - |
| KZW87_RS04690 (KZW87_04675) | - | 932761..934647 (+) | 1887 | WP_234722727.1 | SGNH/GDSL hydrolase family protein | - |
| KZW87_RS04695 (KZW87_04680) | - | 934660..936558 (+) | 1899 | WP_000323263.1 | hypothetical protein | - |
| KZW87_RS04700 (KZW87_04685) | - | 936558..938381 (+) | 1824 | WP_031794946.1 | phage baseplate upper protein | - |
| KZW87_RS04705 (KZW87_04690) | - | 938381..938767 (+) | 387 | WP_000705912.1 | DUF2977 domain-containing protein | - |
| KZW87_RS04710 (KZW87_04695) | - | 938760..938915 (+) | 156 | WP_031766783.1 | XkdX family protein | - |
| KZW87_RS04715 (KZW87_04700) | - | 939000..939368 (+) | 369 | WP_102947779.1 | hypothetical protein | - |
| KZW87_RS04720 (KZW87_04705) | - | 939949..941718 (+) | 1770 | Protein_925 | glucosaminidase domain-containing protein | - |
| KZW87_RS04725 (KZW87_04710) | - | 941731..941979 (+) | 249 | Protein_926 | BppU family phage baseplate upper protein | - |
| KZW87_RS04730 (KZW87_04715) | - | 942171..942608 (+) | 438 | WP_017431806.1 | phage holin | - |
| KZW87_RS04735 (KZW87_04720) | - | 942589..944034 (+) | 1446 | WP_017431807.1 | SH3 domain-containing protein | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 16047.63 Da Isoelectric Point: 5.8698
>NTDB_id=591450 KZW87_RS04505 WP_031795050.1 910979..911407(+) (ssbA) [Staphylococcus aureus strain NT_8]
MLNRVVLVGRLTKDPEFRTTPNGVSVATFTLAVNRTFTNAQGEREADFINCVTFRKQADNVNNYLSKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
MLNRVVLVGRLTKDPEFRTTPNGVSVATFTLAVNRTFTNAQGEREADFINCVTFRKQADNVNNYLSKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
Nucleotide
Download Length: 429 bp
>NTDB_id=591450 KZW87_RS04505 WP_031795050.1 910979..911407(+) (ssbA) [Staphylococcus aureus strain NT_8]
ATGTTAAACAGAGTAGTTTTAGTAGGACGCTTAACAAAAGACCCAGAATTCAGAACAACGCCAAACGGTGTAAGTGTAGC
TACTTTCACTCTTGCAGTCAATAGAACATTCACAAACGCACAAGGAGAACGTGAGGCAGATTTTATTAATTGTGTAACTT
TTAGAAAACAAGCAGATAACGTGAATAACTATTTATCAAAAGGATCATTAGCTGGTGTTGACGGACGCCTACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTGTATTCGTTACCGAAGTTGTATGTGACAGTGTCCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
ATGTTAAACAGAGTAGTTTTAGTAGGACGCTTAACAAAAGACCCAGAATTCAGAACAACGCCAAACGGTGTAAGTGTAGC
TACTTTCACTCTTGCAGTCAATAGAACATTCACAAACGCACAAGGAGAACGTGAGGCAGATTTTATTAATTGTGTAACTT
TTAGAAAACAAGCAGATAACGTGAATAACTATTTATCAAAAGGATCATTAGCTGGTGTTGACGGACGCCTACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTGTATTCGTTACCGAAGTTGTATGTGACAGTGTCCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.302 |
100 |
0.718 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.606 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
74.648 |
0.451 |
| ssbA | Streptococcus mutans UA159 |
40.141 |
100 |
0.401 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
39.86 |
100 |
0.401 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
39.437 |
100 |
0.394 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
39.437 |
100 |
0.394 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
38.732 |
100 |
0.387 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
38.732 |
100 |
0.387 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
38.732 |
100 |
0.387 |
| ssbB/cilA | Streptococcus mitis SK321 |
38.732 |
100 |
0.387 |