Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   LPB404_RS02000 Genome accession   NZ_CP079821
Coordinates   388149..388544 (+) Length   131 a.a.
NCBI ID   WP_120701343.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 383149..393544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS01970 (LPB404_01970) - 383547..383702 (+) 156 WP_219074910.1 hypothetical protein -
  LPB404_RS01975 (LPB404_01975) - 383812..385296 (-) 1485 WP_023022085.1 DUF1846 domain-containing protein -
  LPB404_RS01980 (LPB404_01980) pepA 385456..386520 (-) 1065 WP_117744968.1 glutamyl aminopeptidase -
  LPB404_RS01985 (LPB404_01985) - 386668..386958 (+) 291 WP_219074911.1 DUF4651 domain-containing protein -
  LPB404_RS01990 (LPB404_01990) - 386955..387272 (+) 318 WP_219074912.1 thioredoxin family protein -
  LPB404_RS01995 (LPB404_01995) ytpR 387287..387913 (+) 627 WP_219074913.1 YtpR family tRNA-binding protein -
  LPB404_RS02000 (LPB404_02000) ssbB/cilA 388149..388544 (+) 396 WP_120701343.1 single-stranded DNA-binding protein Machinery gene
  LPB404_RS02005 (LPB404_02005) - 388765..389751 (+) 987 WP_120701342.1 substrate-binding domain-containing protein -
  LPB404_RS02010 (LPB404_02010) - 389751..391070 (+) 1320 WP_219074914.1 sensor histidine kinase -
  LPB404_RS02015 (LPB404_02015) - 391067..391753 (+) 687 WP_023022093.1 response regulator transcription factor -
  LPB404_RS02020 (LPB404_02020) - 391750..393057 (+) 1308 WP_219074915.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14674.65 Da        Isoelectric Point: 5.9328

>NTDB_id=589735 LPB404_RS02000 WP_120701343.1 388149..388544(+) (ssbB/cilA) [Streptococcus rubneri strain LPB0404]
MYNKVILIGRLVADPELHKTNTDKSVARATLAVNRRYKDQNGEREADFITLVVWGKLAETLVSYANKGSLLSVDGELRTR
RYEKNGATQYVTEVLCQGFQLLESRAQRAMRANGAGGDLADLILEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=589735 LPB404_RS02000 WP_120701343.1 388149..388544(+) (ssbB/cilA) [Streptococcus rubneri strain LPB0404]
ATGTACAATAAAGTAATTTTAATCGGGCGCCTTGTGGCAGACCCAGAGCTTCATAAGACCAATACAGACAAGTCCGTTGC
CCGTGCAACTCTGGCTGTTAATCGGCGTTACAAGGATCAAAATGGCGAGCGGGAGGCGGACTTTATCACCCTAGTGGTCT
GGGGGAAATTAGCAGAGACCCTTGTCTCCTATGCCAACAAGGGGAGCTTGCTCTCAGTAGATGGCGAGCTTCGAACCAGA
CGTTATGAGAAAAATGGGGCGACACAATATGTGACAGAAGTGCTCTGTCAAGGCTTCCAGCTCTTAGAAAGTCGCGCTCA
ACGAGCGATGCGGGCTAATGGAGCGGGAGGGGATCTAGCGGATCTCATCCTCGAAGAGGAAGAACTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

82.443

100

0.824
  ssbB/cilA Streptococcus mitis NCTC 12261

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae Rx1

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae D39

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae R6

81.679

100

0.817
  ssbB/cilA Streptococcus mitis SK321

81.679

100

0.817
  ssbA Streptococcus mutans UA159

71.756

100

0.718
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

60.909

83.969

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

47.321

85.496

0.405