Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EGT72_RS01600 Genome accession   NZ_CP079792
Coordinates   328357..329583 (-) Length   408 a.a.
NCBI ID   WP_004692713.1    Uniprot ID   A0A1T1JPM5
Organism   Acinetobacter johnsonii strain AJ_082     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 323357..334583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT72_RS01575 (EGT72_001575) - 324712..325035 (+) 324 WP_125280995.1 pyrimidine/purine nucleoside phosphorylase -
  EGT72_RS01580 (EGT72_001580) rlmB 325178..325927 (+) 750 WP_004978746.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  EGT72_RS01585 (EGT72_001585) - 325959..326876 (+) 918 WP_171428537.1 DMT family transporter -
  EGT72_RS01590 (EGT72_001590) coaE 326891..327490 (-) 600 WP_125273378.1 dephospho-CoA kinase -
  EGT72_RS01595 (EGT72_001595) pilD 327497..328357 (-) 861 WP_125273377.1 A24 family peptidase Machinery gene
  EGT72_RS01600 (EGT72_001600) pilC 328357..329583 (-) 1227 WP_004692713.1 type II secretion system F family protein Machinery gene
  EGT72_RS01605 (EGT72_001605) pilB 329614..331326 (-) 1713 WP_125280996.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EGT72_RS01610 (EGT72_001610) tpiA 331606..332397 (+) 792 WP_010325769.1 triose-phosphate isomerase -
  EGT72_RS01615 (EGT72_001615) secG 332411..332740 (+) 330 WP_125280997.1 preprotein translocase subunit SecG -
  EGT72_RS01645 (EGT72_001645) rimP 333690..334214 (+) 525 WP_004692708.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44818.28 Da        Isoelectric Point: 9.8660

>NTDB_id=589506 EGT72_RS01600 WP_004692713.1 328357..329583(-) (pilC) [Acinetobacter johnsonii strain AJ_082]
MAVKKAQMMPTFNYEGIDRKGAKIKGELPARNLALAKVTLRKQGITIKSIREKKKNILEGIMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVVVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFILIIVVGVVIT
ALLETKKRSKKFRDMLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRATNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTAMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=589506 EGT72_RS01600 WP_004692713.1 328357..329583(-) (pilC) [Acinetobacter johnsonii strain AJ_082]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAATTATGAAGGGATTGATCGTAAAGGGGCAAAAATAAAAGGGGA
ATTGCCTGCACGTAATCTCGCCCTCGCCAAAGTTACTTTGCGCAAACAAGGGATTACCATCAAGAGTATTCGAGAAAAGA
AAAAGAATATTCTTGAAGGGATAATGAAGAAAAAAGTGACCACACTGGACATCACGATTTTCACTCGACAGCTCGCAACC
ATGATGAAAGCGGGTGTACCATTGGTACAAGGCTTTGAAATTGTAGCTGAAGGCTTGGAAAACCCGTCTATGCGTGAAGT
TGTACTGGGCATTAAGGGTGAAGTGGAAGGCGGTAATACCTTTGCTGGAGCACTCAAAAAATATCCGCAATATTTTGACA
ACTTATTCTGTTCATTGGTTGAATCAGGTGAACAATCAGGTGCGCTTGAGACCATGCTGGACCGTGTAGCGGTCTATAAA
GAAAAAAGTGAACTGCTCAAACAAAAAATTAAAAAAGCCATGAAATACCCAGCAACCGTGGTTGTGGTTGCTGTGATCGT
GACTATTATTTTGATGGTCAAAGTTGTGCCTGTTTTCCAAGATTTATTCAGCTCTTTTGGTGCAGACTTACCTGCATTCA
CTAAAATGGTGGTAAATATGTCTGAATGGATGCAGAAATACTGGTTCATTTTGATTATTGTCGTTGGTGTTGTGATTACA
GCTTTACTCGAAACCAAAAAGCGTAGTAAAAAGTTTCGTGACATGTTGGATAAAGCCGCGCTGAAAGCCCCAATTTTTGG
TGATTTAGTCTATAAAGCAATTATCGCGCGCTATAGCCGCACGCTGTCTACCACCTTTGCTGCGGGTGTACCCTTAATTG
ATGCCCTAGAGTCTACAGCAGGCGCAACCAACAATGTTGTGTACGAAGAAGCTGTGATGAAGATTCGTGAAGATGTCGCA
ACAGGGCAACAGCTTCAATTCGCGATGCGTGCCACCAATAAATTTCCATCAATGGCCGTACAGATGGTGGCGATTGGTGA
AGAATCTGGTGCTCTCGATGCCATGCTGGATAAAGTTGCCACTCACTATGAAAATGAAGTCGATAATGCGGTAGATGGCT
TAACGGCAATGATGGAACCTCTGATCATGGCGGTCTTGGGTGTACTTGTGGGTGGTCTAGTGATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T1JPM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.725

100

0.887
  pilC Acinetobacter baylyi ADP1

81.863

100

0.819
  pilC Pseudomonas stutzeri DSM 10701

61.728

99.265

0.613
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

46.482

97.549

0.453
  pilG Neisseria meningitidis 44/76-A

46.482

97.549

0.453
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.667

100

0.417
  pilC Thermus thermophilus HB27

36.908

98.284

0.363