Detailed information NTG0589505

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EGT72_RS01595
• Genome accession: NZ_CP079792
• Coordinates: 327497..328357 (-)
• Length: 286 a.a.
• NCBI ID: WP_125273377.1
• Uniprot ID: A0A3R9GA68
• Organism: Acinetobacter johnsonii strain AJ_082
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 322497..333357

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGT72_RS01570 (EGT72_001570)	recN	322657..324318 (-)	1662	WP_125280994.1	DNA repair protein RecN	-
EGT72_RS01575 (EGT72_001575)	-	324712..325035 (+)	324	WP_125280995.1	pyrimidine/purine nucleoside phosphorylase	-
EGT72_RS01580 (EGT72_001580)	rlmB	325178..325927 (+)	750	WP_004978746.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
EGT72_RS01585 (EGT72_001585)	-	325959..326876 (+)	918	WP_171428537.1	DMT family transporter	-
EGT72_RS01590 (EGT72_001590)	coaE	326891..327490 (-)	600	WP_125273378.1	dephospho-CoA kinase	-
EGT72_RS01595 (EGT72_001595)	pilD	327497..328357 (-)	861	WP_125273377.1	A24 family peptidase	Machinery gene
EGT72_RS01600 (EGT72_001600)	pilC	328357..329583 (-)	1227	WP_004692713.1	type II secretion system F family protein	Machinery gene
EGT72_RS01605 (EGT72_001605)	pilB	329614..331326 (-)	1713	WP_125280996.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EGT72_RS01610 (EGT72_001610)	tpiA	331606..332397 (+)	792	WP_010325769.1	triose-phosphate isomerase	-
EGT72_RS01615 (EGT72_001615)	secG	332411..332740 (+)	330	WP_125280997.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31990.37 Da
• Isoelectric Point: 8.0620

>NTDB_id=589505 EGT72_RS01595 WP_125273377.1 327497..328357(-) (pilD) [Acinetobacter johnsonii strain AJ_082]
MQEIISYIINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLLLHPEQPIIDETKLTLSKPASTCPKCKSA
IHWYQNIPVMSWFLLRGKCGTCHNPISIRYPAIELLTAICALVVVAVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR
YTLTLGGLGLGVNSYAIYTTPTAAIWGYIIGFLCLWIVYYLFKLFTGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGN

Nucleotide

• Length: 861 bp

>NTDB_id=589505 EGT72_RS01595 WP_125273377.1 327497..328357(-) (pilD) [Acinetobacter johnsonii strain AJ_082]
ATGCAAGAAATAATTTCCTATATTATCAATACTCCAATGGCGCTTTATTTCGCCGTTGGAGTTTTTAGTTTGTGCATCGG
TAGTTTTCTGAATGTGGTGATCTATCGCACTCCAAAAATGATGGAACAAGAATGGCGCACCGACTGCCAACTTCTGCTTC
ATCCTGAGCAGCCAATTATTGATGAAACGAAGCTCACATTGAGTAAGCCTGCCTCAACCTGTCCCAAATGTAAAAGTGCC
ATACACTGGTATCAAAATATCCCTGTGATGAGTTGGTTCCTGCTACGAGGAAAGTGTGGCACTTGCCATAACCCGATCAG
CATTCGCTACCCTGCGATTGAACTCCTGACCGCCATTTGTGCTTTGGTCGTGGTTGCAGTATTTGGGCCAACAATCCAAA
TGCTGTTCGGTCTCGTGCTCACTTATATTTTAATCGCCTTAACATTTATTGATTTTGACACTCAGCTTTTACCTGATCGT
TATACCCTCACCCTTGGAGGTCTAGGTTTAGGGGTCAATAGTTATGCGATTTACACCACGCCAACAGCGGCCATTTGGGG
CTATATCATTGGTTTCTTATGCTTATGGATTGTCTACTATCTGTTTAAACTCTTCACAGGCAAGGAAGGTATGGGTTATG
GTGATTTTAAGTTACTTGCTGCTTTAGGCGCATGGATGGGCCCTTTGCTGCTGCCGCTAATTGTGCTACTTTCTTCTTTC
GTAGGCGCCATCATCGGCATCATCCTGCTCAAAGTCCGTAAAGAAAATCAGCCTTTTGCTTTTGGCCCATATATTGCCAT
CGCAGGATGGATTGCCTTTTTGTGGGGCGAACAAATTATGAAAATATACTTAGGCAATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

3D structure

• AlphaFold DB: A0A3R9GA68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	78.596	99.65	0.783
pilD	Acinetobacter nosocomialis M2	78.596	99.65	0.783
pilD	Vibrio cholerae strain A1552	54.478	93.706	0.51
pilD	Vibrio campbellii strain DS40M4	51.301	94.056	0.483
pilD	Neisseria gonorrhoeae MS11	45.788	95.455	0.437