Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KYK33_RS02585 Genome accession   NZ_CP079742
Coordinates   553100..554341 (-) Length   413 a.a.
NCBI ID   WP_224431930.1    Uniprot ID   -
Organism   Aeromonas rivuli strain 20-VB00005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 548100..559341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYK33_RS02560 (KYK33_02555) mutT 549960..550370 (+) 411 WP_224431928.1 8-oxo-dGTP diphosphatase MutT -
  KYK33_RS02565 (KYK33_02560) yacG 550446..550640 (-) 195 WP_042041799.1 DNA gyrase inhibitor YacG -
  KYK33_RS02570 (KYK33_02565) zapD 550702..551424 (-) 723 WP_042041798.1 cell division protein ZapD -
  KYK33_RS02575 (KYK33_02570) coaE 551462..552076 (-) 615 WP_042041797.1 dephospho-CoA kinase -
  KYK33_RS02580 (KYK33_02575) pilD 552143..553015 (-) 873 WP_224431929.1 A24 family peptidase Machinery gene
  KYK33_RS02585 (KYK33_02580) pilC 553100..554341 (-) 1242 WP_224431930.1 type II secretion system F family protein Machinery gene
  KYK33_RS02590 (KYK33_02585) pilB 554404..556110 (-) 1707 WP_224431931.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  KYK33_RS02595 (KYK33_02590) - 556114..556530 (-) 417 WP_224431932.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  KYK33_RS02600 (KYK33_02595) nadC 556955..557824 (-) 870 WP_224431933.1 carboxylating nicotinate-nucleotide diphosphorylase -
  KYK33_RS02605 (KYK33_02600) - 557830..558306 (-) 477 WP_042041791.1 TIGR02281 family clan AA aspartic protease -
  KYK33_RS02610 (KYK33_02605) ampD 558418..558993 (+) 576 WP_224432928.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45815.03 Da        Isoelectric Point: 9.8063

>NTDB_id=589102 KYK33_RS02585 WP_224431930.1 553100..554341(-) (pilC) [Aeromonas rivuli strain 20-VB00005]
MATLSKKRNQPAKVYTFRWKGVNRKGKDISGELQAEHVNMAKAELRKQGVSVSRIGKKSHGLFSKAGAKIKAMDIAVVSR
QLATMLSAGVPLVQSLQIIARSHEKSSMRDLMGQIASDVETGTPMSEALRQHPRHFDDLYCDLIEAGEHSGALETIYDRI
ATYREKAETLKSKIKKAMFYPSMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQDWWYMIFGGIA
LAIFLYVRAWRRYSKVRDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAILAIR
NEVMAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDEMLSKVATIFEQEVDDLVDGLTSLLEPFIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=589102 KYK33_RS02585 WP_224431930.1 553100..554341(-) (pilC) [Aeromonas rivuli strain 20-VB00005]
ATGGCTACTCTATCGAAGAAGCGCAACCAGCCCGCCAAGGTCTATACCTTCCGCTGGAAAGGGGTCAATCGCAAAGGCAA
GGATATCTCCGGGGAGCTACAGGCCGAACACGTCAATATGGCCAAGGCCGAGCTGCGCAAGCAGGGGGTCAGCGTCTCCC
GTATCGGCAAAAAGAGTCACGGCCTCTTCTCCAAGGCGGGTGCCAAGATCAAGGCGATGGATATCGCCGTGGTGAGCCGC
CAACTTGCTACCATGTTGAGCGCTGGCGTACCCCTAGTGCAGAGCCTGCAGATCATCGCCCGTAGCCACGAAAAATCGAG
CATGCGTGATTTGATGGGGCAGATTGCCAGCGATGTCGAAACCGGTACGCCCATGTCGGAAGCCCTGCGCCAACACCCCC
GCCATTTTGACGATCTCTATTGCGATTTGATCGAGGCAGGGGAACATTCGGGGGCACTCGAGACCATCTATGATCGCATC
GCTACCTATCGGGAAAAGGCCGAAACGCTCAAATCCAAGATCAAGAAGGCGATGTTCTACCCCAGTATGGTGATCCTGGT
GGCCATAGTGGTGACCTCCATCCTGCTGTTGTTTGTCATCCCGCAGTTTGAAGACATCTTCAAGAGCTTCGGCGCCGAGC
TGCCCATTTTCACCCAGTTCGTCATTGGCATCTCCCGCTTCATGCAGGATTGGTGGTATATGATTTTCGGCGGGATAGCC
CTGGCCATCTTCCTCTATGTACGGGCCTGGCGCCGCTATTCCAAAGTCCGAGATAACACCGACAAATTCATTCTCACCAT
CCCCGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGCTTCGCTCGCACCCTCTCCACTACCTTCAGCGCCGGTA
TTCCCCTGGTGGATGCACTTATCTCGGCGGCAGGAGCCTCGGGGAACTATGTCTATCGCACTGCCATTCTGGCCATTCGC
AATGAAGTGATGGCTGGTATGCAGATCAACGTCGCCATGCGCACCGTGGATCTCTTCCCGGACATGGTGATCCAGATGGT
GATGATAGGAGAGGAGTCTGGCGCTATCGATGAGATGCTCTCCAAGGTCGCGACCATCTTCGAGCAGGAGGTTGACGATC
TGGTCGACGGCCTCACCAGTCTGCTAGAGCCCTTTATCATGGTGGTACTGGGCGTGCTGGTTGGCGGCATGGTGGTGGCC
ATGTATCTGCCCATTTTCAAACTGGGTTCTGTCATCCACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.5

96.852

0.538
  pilC Acinetobacter baumannii D1279779

53.367

97.094

0.518
  pilC Acinetobacter baylyi ADP1

52.897

96.126

0.508
  pilC Legionella pneumophila strain ERS1305867

50.864

98.063

0.499
  pilC Vibrio cholerae strain A1552

46.455

99.031

0.46
  pilC Vibrio campbellii strain DS40M4

45.137

97.094

0.438
  pilG Neisseria gonorrhoeae MS11

40.415

93.462

0.378
  pilG Neisseria meningitidis 44/76-A

40.155

93.462

0.375
  pilC Thermus thermophilus HB27

38.25

96.852

0.37