Detailed information NTG0589101

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KYK33_RS02580
• Genome accession: NZ_CP079742
• Coordinates: 552143..553015 (-)
• Length: 290 a.a.
• NCBI ID: WP_224431929.1
• Uniprot ID: -
• Organism: Aeromonas rivuli strain 20-VB00005
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 547143..558015

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KYK33_RS02555 (KYK33_02550)	secA	547154..549874 (+)	2721	WP_224431927.1	preprotein translocase subunit SecA	-
KYK33_RS02560 (KYK33_02555)	mutT	549960..550370 (+)	411	WP_224431928.1	8-oxo-dGTP diphosphatase MutT	-
KYK33_RS02565 (KYK33_02560)	yacG	550446..550640 (-)	195	WP_042041799.1	DNA gyrase inhibitor YacG	-
KYK33_RS02570 (KYK33_02565)	zapD	550702..551424 (-)	723	WP_042041798.1	cell division protein ZapD	-
KYK33_RS02575 (KYK33_02570)	coaE	551462..552076 (-)	615	WP_042041797.1	dephospho-CoA kinase	-
KYK33_RS02580 (KYK33_02575)	pilD	552143..553015 (-)	873	WP_224431929.1	A24 family peptidase	Machinery gene
KYK33_RS02585 (KYK33_02580)	pilC	553100..554341 (-)	1242	WP_224431930.1	type II secretion system F family protein	Machinery gene
KYK33_RS02590 (KYK33_02585)	pilB	554404..556110 (-)	1707	WP_224431931.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
KYK33_RS02595 (KYK33_02590)	-	556114..556530 (-)	417	WP_224431932.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
KYK33_RS02600 (KYK33_02595)	nadC	556955..557824 (-)	870	WP_224431933.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32320.65 Da
• Isoelectric Point: 7.4099

>NTDB_id=589101 KYK33_RS02580 WP_224431929.1 552143..553015(-) (pilD) [Aeromonas rivuli strain 20-VB00005]
MQPMTELALSLPWLYLTLVFLFSLTIGSFLNVVIHRLPIMLERGWLAEYRDYFHPESESAPTEPYNLMVPRSRCPHCHHA
ISALENIPLLSWLWLKGRCRSCSAPISARYPLVELLTALLSVVVASRLPADPSLLAYLLLTWVLVALTFIDLDKMLLPDP
LTLPLLWAGLLVNLIWQKVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPLILLLSSL
VGAVIGIALIASRRQAHSNPIPFGPYLAIAGWVALLWGDSITTWYLHMVL

Nucleotide

• Length: 873 bp

>NTDB_id=589101 KYK33_RS02580 WP_224431929.1 552143..553015(-) (pilD) [Aeromonas rivuli strain 20-VB00005]
ATGCAACCCATGACTGAACTGGCGCTCAGCCTGCCCTGGCTCTACCTGACCCTGGTATTTCTCTTTTCCCTGACCATTGG
CAGCTTCCTCAATGTCGTCATCCACCGCCTGCCCATCATGCTCGAGCGTGGCTGGCTGGCCGAGTATCGGGACTACTTTC
ATCCTGAGAGCGAGTCCGCCCCTACCGAGCCCTATAACCTCATGGTGCCACGCTCCCGGTGCCCCCATTGCCACCATGCC
ATCAGCGCCCTGGAAAACATCCCGCTATTGAGCTGGCTCTGGCTCAAGGGGCGCTGCCGCAGCTGCTCCGCGCCTATCTC
GGCGCGCTATCCCCTGGTCGAGCTGCTCACCGCCCTGCTCTCCGTCGTCGTGGCCAGCCGCCTGCCTGCTGACCCTTCCC
TGCTGGCCTATCTGCTGCTCACCTGGGTGCTGGTTGCTCTGACCTTCATCGATCTGGACAAGATGCTACTGCCAGATCCC
CTCACGCTGCCGCTGCTCTGGGCTGGCCTGCTGGTCAACCTCATCTGGCAGAAGGTGCCCTTGGCGGATGCCGTCATCGG
TGCCATGGCCGGTTATCTGGTGCTCTGGAGCCTCTATTGGGCCTTCAAGCTGCTCACCGGCAAGGAAGGGATGGGTTATG
GTGACTTCAAGTTGCTGGCAGCCCTGGGGGCCTGGCTCGGCTGGCAGGCGCTGCCGCTGATCCTGCTGCTCTCCTCCTTG
GTGGGCGCCGTGATCGGCATAGCCCTTATCGCCTCCCGCCGCCAAGCGCACAGCAACCCCATCCCCTTCGGCCCCTATCT
CGCCATCGCCGGTTGGGTCGCTCTGCTCTGGGGAGATAGCATCACCACCTGGTATCTGCACATGGTGCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	58.511	97.241	0.569
pilD	Vibrio campbellii strain DS40M4	54.643	96.552	0.528
pilD	Acinetobacter nosocomialis M2	54.104	92.414	0.5
pilD	Acinetobacter baumannii D1279779	53.358	92.414	0.493
pilD	Neisseria gonorrhoeae MS11	46.763	95.862	0.448