Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | KV708_RS25855 | Genome accession | NZ_CP079703 |
| Coordinates | 5610943..5611377 (-) | Length | 144 a.a. |
| NCBI ID | WP_081034056.1 | Uniprot ID | - |
| Organism | Comamonas thiooxydans strain N1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5605943..5616377
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KV708_RS25830 (KV708_25715) | - | 5606039..5606512 (+) | 474 | WP_057094113.1 | hypothetical protein | - |
| KV708_RS25835 (KV708_25720) | - | 5606621..5606971 (+) | 351 | WP_034348032.1 | phage holin family protein | - |
| KV708_RS25840 (KV708_25725) | - | 5606930..5608561 (-) | 1632 | WP_057094836.1 | M48 family metalloprotease | - |
| KV708_RS25845 (KV708_25730) | moaC | 5608762..5609232 (+) | 471 | WP_057094115.1 | cyclic pyranopterin monophosphate synthase MoaC | - |
| KV708_RS25850 (KV708_25735) | - | 5609226..5610935 (-) | 1710 | WP_081034055.1 | O-antigen ligase | - |
| KV708_RS25855 (KV708_25740) | pilA | 5610943..5611377 (-) | 435 | WP_081034056.1 | pilin | Machinery gene |
| KV708_RS25860 (KV708_25745) | - | 5611566..5612285 (-) | 720 | WP_057094118.1 | FHA domain-containing protein | - |
| KV708_RS25865 (KV708_25750) | ssb | 5612602..5613150 (-) | 549 | WP_003064700.1 | single-stranded DNA-binding protein | Machinery gene |
| KV708_RS25870 (KV708_25755) | - | 5613411..5614583 (-) | 1173 | WP_057094837.1 | MFS transporter | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 14495.70 Da Isoelectric Point: 9.5825
>NTDB_id=588735 KV708_RS25855 WP_081034056.1 5610943..5611377(-) (pilA) [Comamonas thiooxydans strain N1]
MKRSIQKGFTLIELMIVVAIIGILAAVALPAYQDYTVRARVSEALVLASSAKTAVTENAATGKDLAAGIGSISATSNVAS
MTVASNTGVISVVTSSAAKSISLALTPTAGGSGLTSGTVPEGNISWKCSISDSTKAKYVPSECR
MKRSIQKGFTLIELMIVVAIIGILAAVALPAYQDYTVRARVSEALVLASSAKTAVTENAATGKDLAAGIGSISATSNVAS
MTVASNTGVISVVTSSAAKSISLALTPTAGGSGLTSGTVPEGNISWKCSISDSTKAKYVPSECR
Nucleotide
Download Length: 435 bp
>NTDB_id=588735 KV708_RS25855 WP_081034056.1 5610943..5611377(-) (pilA) [Comamonas thiooxydans strain N1]
ATGAAGCGTTCCATTCAAAAGGGTTTCACCTTGATCGAACTGATGATCGTTGTCGCGATCATCGGTATTTTGGCTGCTGT
GGCTCTGCCTGCTTATCAGGATTACACAGTGCGTGCACGTGTTTCTGAAGCTCTGGTGTTGGCGTCTAGTGCTAAGACTG
CTGTGACGGAAAATGCCGCTACGGGTAAAGATCTCGCTGCTGGAATTGGATCCATTTCTGCAACTAGTAATGTGGCTAGT
ATGACTGTCGCTTCTAATACTGGCGTTATTTCAGTTGTTACATCTTCGGCTGCCAAAAGCATCTCTTTGGCCCTGACTCC
TACTGCCGGAGGATCTGGCCTTACTTCTGGCACAGTTCCTGAAGGAAATATCAGCTGGAAATGCAGCATTTCTGACTCCA
CCAAGGCTAAGTACGTACCTTCTGAGTGCCGCTAA
ATGAAGCGTTCCATTCAAAAGGGTTTCACCTTGATCGAACTGATGATCGTTGTCGCGATCATCGGTATTTTGGCTGCTGT
GGCTCTGCCTGCTTATCAGGATTACACAGTGCGTGCACGTGTTTCTGAAGCTCTGGTGTTGGCGTCTAGTGCTAAGACTG
CTGTGACGGAAAATGCCGCTACGGGTAAAGATCTCGCTGCTGGAATTGGATCCATTTCTGCAACTAGTAATGTGGCTAGT
ATGACTGTCGCTTCTAATACTGGCGTTATTTCAGTTGTTACATCTTCGGCTGCCAAAAGCATCTCTTTGGCCCTGACTCC
TACTGCCGGAGGATCTGGCCTTACTTCTGGCACAGTTCCTGAAGGAAATATCAGCTGGAAATGCAGCATTTCTGACTCCA
CCAAGGCTAAGTACGTACCTTCTGAGTGCCGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
48.765 |
100 |
0.549 |
| comP | Acinetobacter baylyi ADP1 |
48.387 |
100 |
0.521 |
| pilA2 | Legionella pneumophila str. Paris |
50.694 |
100 |
0.507 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
50 |
100 |
0.5 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
38.69 |
100 |
0.451 |
| pilE | Neisseria gonorrhoeae MS11 |
38.75 |
100 |
0.431 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
38.961 |
100 |
0.417 |
| pilA/pilA1 | Eikenella corrodens VA1 |
36.585 |
100 |
0.417 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.776 |
100 |
0.396 |
| pilA | Pseudomonas aeruginosa PAK |
38.776 |
100 |
0.396 |