Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KW114_RS04155 Genome accession   NZ_CP079097
Coordinates   945018..946232 (-) Length   404 a.a.
NCBI ID   WP_010961338.1    Uniprot ID   Q606C3
Organism   Methylococcus capsulatus strain KN2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 940018..951232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW114_RS04120 (KW114_04120) - 940040..940702 (+) 663 WP_017366374.1 HAD family phosphatase -
  KW114_RS04125 (KW114_04125) - 940711..940941 (-) 231 WP_010961331.1 sulfurtransferase TusA family protein -
  KW114_RS04130 (KW114_04130) cysG 940990..942414 (+) 1425 WP_218798019.1 siroheme synthase CysG -
  KW114_RS04135 (KW114_04135) yacG 942427..942642 (-) 216 WP_218798020.1 DNA gyrase inhibitor YacG -
  KW114_RS04140 (KW114_04140) zapD 942655..943368 (-) 714 WP_371131307.1 cell division protein ZapD -
  KW114_RS04145 (KW114_04145) coaE 943524..944120 (-) 597 WP_218798022.1 dephospho-CoA kinase -
  KW114_RS04150 (KW114_04150) pilD 944128..944994 (-) 867 WP_218798023.1 A24 family peptidase Machinery gene
  KW114_RS04155 (KW114_04155) pilC 945018..946232 (-) 1215 WP_010961338.1 type II secretion system F family protein Machinery gene
  KW114_RS04160 (KW114_04160) pilB 946237..947952 (-) 1716 WP_010961339.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KW114_RS04165 (KW114_04165) - 948002..950767 (-) 2766 WP_218798024.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 44020.67 Da        Isoelectric Point: 9.8132

>NTDB_id=587668 KW114_RS04155 WP_010961338.1 945018..946232(-) (pilC) [Methylococcus capsulatus strain KN2]
MANQETALFVWEGLDRNGSRTRGEISSRSEITARTELRRQGIRVVKIKKKPKPLFSGPRQKITPKHIAVFSRQLATMLSA
GVPLVQAFDIVGRGHDNPAMQDLLMSIKADVEAGTTLADALSKHPVHFDELFCNLVRAGEQAGVLETLLHKVADYKEKTE
SLKGKIKKALAYPIAVVVVAVIVTSILLIFVVPTFEDLFKSFGADLPAFTQMVINLSRWLRDWWYVVFGSLGVAAAAFVK
ARQRSPAFNHLLDRLALGLPVVGAILRKAAVARFARTLSTMSAAGVPLVEALQSVAGATGNIIYGEAVMRMREDVSTGQQ
LQMSMRQANLFPNMVMQMVAIGEESGALDSMLSKVADFYEEEVDNAVDSLSSLLEPLIMVVLGVLIGGLVIAMYLPIFKL
GSVV

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=587668 KW114_RS04155 WP_010961338.1 945018..946232(-) (pilC) [Methylococcus capsulatus strain KN2]
GTGGCGAACCAGGAAACCGCTTTGTTCGTCTGGGAGGGCCTGGACAGGAACGGCAGCCGGACCCGGGGTGAAATCAGCTC
CCGGTCGGAGATCACGGCGCGCACGGAGTTGAGGCGCCAGGGCATCCGCGTCGTCAAGATCAAGAAGAAGCCCAAGCCCC
TCTTCAGTGGTCCACGCCAGAAGATCACGCCCAAGCACATCGCCGTATTCAGCCGCCAGTTGGCGACCATGCTGTCGGCC
GGGGTTCCCCTGGTCCAGGCATTCGACATCGTGGGCCGCGGCCATGACAATCCGGCCATGCAGGATCTGCTGATGAGCAT
CAAGGCCGACGTGGAAGCCGGCACGACCCTGGCGGATGCCCTGTCGAAGCACCCGGTCCATTTCGACGAGCTTTTCTGTA
ATCTGGTCCGGGCCGGCGAACAGGCCGGCGTGCTGGAAACCTTGTTGCACAAGGTGGCGGACTACAAGGAAAAAACCGAG
TCCCTCAAGGGCAAGATCAAGAAGGCTTTGGCTTATCCGATCGCCGTCGTCGTGGTTGCGGTGATCGTGACGTCGATCTT
GCTGATTTTCGTGGTGCCGACCTTCGAGGATCTGTTCAAGAGCTTCGGCGCCGATCTGCCGGCCTTCACCCAGATGGTGA
TCAACCTTTCGCGTTGGCTGCGGGACTGGTGGTACGTGGTGTTCGGCTCGCTAGGCGTAGCCGCCGCGGCGTTCGTGAAG
GCCCGGCAGCGCTCGCCGGCGTTCAATCATCTGCTGGACCGGCTGGCCTTGGGGCTGCCGGTCGTCGGCGCCATCCTGCG
CAAGGCCGCCGTCGCGCGCTTCGCCCGGACCTTGTCCACCATGTCCGCGGCCGGCGTGCCCCTGGTCGAGGCGTTGCAAT
CGGTGGCGGGGGCGACCGGAAACATCATCTACGGTGAAGCTGTCATGCGTATGCGCGAAGACGTATCCACCGGCCAGCAG
CTCCAGATGTCGATGCGCCAGGCCAACCTGTTCCCCAACATGGTGATGCAGATGGTGGCGATTGGCGAGGAGTCGGGGGC
GCTCGACAGCATGCTGTCCAAGGTCGCCGATTTCTACGAGGAAGAAGTGGACAATGCCGTGGATTCGTTGAGCAGCCTGC
TCGAACCTTTGATCATGGTGGTTCTGGGCGTGTTGATCGGGGGGCTCGTGATCGCCATGTATCTGCCGATTTTCAAACTG
GGTTCCGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q606C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.5

99.01

0.599
  pilC Legionella pneumophila strain ERS1305867

61.111

98.02

0.599
  pilC Acinetobacter baumannii D1279779

58.438

98.267

0.574
  pilC Acinetobacter baylyi ADP1

57.32

99.752

0.572
  pilG Neisseria meningitidis 44/76-A

47.103

98.267

0.463
  pilG Neisseria gonorrhoeae MS11

47.103

98.267

0.463
  pilC Vibrio campbellii strain DS40M4

44.361

98.762

0.438
  pilC Vibrio cholerae strain A1552

43.434

98.02

0.426
  pilC Thermus thermophilus HB27

41.103

98.762

0.406