Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KW115_RS13365 Genome accession   NZ_CP079095
Coordinates   2748137..2749351 (+) Length   404 a.a.
NCBI ID   WP_218806196.1    Uniprot ID   -
Organism   Methylococcus sp. Mc7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2743137..2754351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW115_RS13355 (KW115_13355) - 2743605..2746367 (+) 2763 WP_218806194.1 valine--tRNA ligase -
  KW115_RS13360 (KW115_13360) pilB 2746417..2748132 (+) 1716 WP_218806195.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KW115_RS13365 (KW115_13365) pilC 2748137..2749351 (+) 1215 WP_218806196.1 type II secretion system F family protein Machinery gene
  KW115_RS13370 (KW115_13370) pilD 2749362..2750240 (+) 879 WP_218806197.1 A24 family peptidase Machinery gene
  KW115_RS13375 (KW115_13375) coaE 2750248..2750844 (+) 597 WP_218806198.1 dephospho-CoA kinase -
  KW115_RS13380 (KW115_13380) zapD 2750946..2751713 (+) 768 WP_218806199.1 cell division protein ZapD -
  KW115_RS13385 (KW115_13385) yacG 2751724..2751939 (+) 216 WP_218806200.1 DNA gyrase inhibitor YacG -
  KW115_RS13390 (KW115_13390) cysG 2751950..2753377 (-) 1428 WP_218806201.1 siroheme synthase CysG -
  KW115_RS13395 (KW115_13395) - 2753425..2753655 (+) 231 WP_218806202.1 sulfurtransferase TusA family protein -
  KW115_RS13400 (KW115_13400) - 2753664..2754326 (-) 663 WP_218806203.1 HAD family phosphatase -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43845.40 Da        Isoelectric Point: 9.7891

>NTDB_id=587637 KW115_RS13365 WP_218806196.1 2748137..2749351(+) (pilC) [Methylococcus sp. Mc7]
MANQETASFVWEGLDRNGSRTKGEVSARSEITARAELRRQGIRVVKIKKKPKPLFGGPRKKITPKHIAVFSRQLATMLSA
GVPLVQAFDIVGRGHDNPAMQDLLLGIKADVESGTTLADALSKRPVHFDELFCNLVRAGEQAGVLETLLHKVADYKEKTE
SLKGKIKKALTYPIAVVVVAVIVTSILLIFVVPTFEDLFKSFGADLPAFTQLVIDLSRWLRDWWYVAFGSLGVAATAFVK
ARQRSPAFNHLLDRLVLGVPVVGAILHKAAVARFARTLSTMSAAGVPLVEALQSVAGATGNIIYGEAVMRMRDDVSTGQQ
LQMSMRQANLFPNMVMQMVAIGEESGALDSMLSKVADFYEEEVDNAVDSLSSLLEPLIMVVLGVLVGGLVIAMYLPIFKL
GSVV

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=587637 KW115_RS13365 WP_218806196.1 2748137..2749351(+) (pilC) [Methylococcus sp. Mc7]
GTGGCGAACCAGGAAACCGCATCGTTCGTCTGGGAGGGCTTGGACAGGAACGGCAGCCGGACCAAGGGCGAAGTCAGCGC
CCGCTCGGAGATCACCGCGCGCGCGGAGCTGAGGCGGCAGGGCATCCGCGTCGTCAAGATCAAGAAGAAGCCCAAGCCGC
TGTTCGGCGGTCCGCGCAAGAAGATCACGCCGAAGCACATCGCGGTGTTCAGCCGCCAGCTCGCGACCATGCTGTCGGCC
GGGGTCCCGCTGGTGCAGGCATTCGACATCGTGGGCCGCGGCCACGATAATCCGGCCATGCAGGATCTCCTCCTGGGCAT
CAAGGCCGACGTCGAGAGCGGCACGACCCTGGCGGATGCGCTATCGAAGCGCCCGGTCCATTTCGACGAGCTGTTCTGCA
ATTTGGTCCGGGCCGGCGAACAGGCCGGTGTGCTGGAAACCCTGTTGCACAAGGTGGCCGATTACAAGGAAAAAACCGAG
TCCCTCAAGGGCAAGATCAAGAAGGCTTTGACCTATCCGATCGCGGTCGTCGTCGTCGCGGTGATCGTGACTTCGATTCT
GTTGATTTTCGTGGTGCCGACCTTCGAGGACCTGTTCAAGAGCTTCGGCGCCGATCTGCCCGCCTTCACCCAGCTGGTGA
TCGATCTTTCGCGCTGGCTGCGGGACTGGTGGTACGTGGCGTTCGGCTCGCTGGGCGTCGCGGCGACGGCGTTCGTGAAG
GCTCGGCAGCGTTCGCCGGCGTTCAATCATCTGCTGGACCGGCTGGTCTTGGGAGTCCCGGTCGTCGGCGCCATTCTGCA
CAAGGCCGCCGTCGCCCGCTTCGCCAGGACCTTGTCCACCATGTCCGCGGCAGGCGTACCCCTGGTCGAGGCATTGCAGT
CGGTGGCGGGCGCGACCGGAAACATCATTTACGGCGAGGCGGTCATGAGGATGCGCGACGATGTATCCACCGGCCAGCAG
CTCCAGATGTCGATGCGCCAGGCCAACCTGTTCCCCAATATGGTGATGCAGATGGTGGCGATCGGAGAGGAATCGGGCGC
GCTCGACAGCATGCTGTCCAAAGTCGCCGATTTCTACGAAGAGGAAGTGGACAATGCGGTGGACTCGTTGAGCAGCCTCC
TCGAGCCTTTGATCATGGTGGTTCTGGGCGTGTTGGTCGGAGGGCTCGTGATCGCCATGTATCTGCCGATTTTCAAGCTG
GGTTCCGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

61.364

98.02

0.601
  pilC Legionella pneumophila strain ERS1305867

61.209

98.267

0.601
  pilC Acinetobacter baylyi ADP1

58.942

98.267

0.579
  pilC Acinetobacter baumannii D1279779

57.96

99.505

0.577
  pilG Neisseria meningitidis 44/76-A

46.851

98.267

0.46
  pilG Neisseria gonorrhoeae MS11

46.851

98.267

0.46
  pilC Vibrio campbellii strain DS40M4

44

99.01

0.436
  pilC Vibrio cholerae strain A1552

43.829

98.267

0.431
  pilC Thermus thermophilus HB27

40.955

98.515

0.403