Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KUD94_RS01325 Genome accession   NZ_CP078069
Coordinates   282733..283950 (-) Length   405 a.a.
NCBI ID   WP_218238123.1    Uniprot ID   -
Organism   Comamonas sp. NLF-1-9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 277733..288950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUD94_RS01285 (KUD94_01285) - 277809..278291 (-) 483 WP_218238115.1 monooxygenase family protein -
  KUD94_RS01290 (KUD94_01290) - 278288..278947 (-) 660 WP_218238116.1 glutathione S-transferase family protein -
  KUD94_RS01295 (KUD94_01295) - 278954..279244 (-) 291 WP_218238117.1 2TM domain-containing protein -
  KUD94_RS01300 (KUD94_01300) - 279258..279821 (-) 564 WP_218238118.1 DUF6622 family protein -
  KUD94_RS01305 (KUD94_01305) - 279965..280252 (-) 288 WP_218238119.1 DUF1330 domain-containing protein -
  KUD94_RS01310 (KUD94_01310) zapD 280424..281179 (-) 756 WP_218238120.1 cell division protein ZapD -
  KUD94_RS01315 (KUD94_01315) coaE 281209..281826 (-) 618 WP_218238121.1 dephospho-CoA kinase -
  KUD94_RS01320 (KUD94_01320) pilD 281833..282729 (-) 897 WP_218238122.1 A24 family peptidase Machinery gene
  KUD94_RS01325 (KUD94_01325) pilC 282733..283950 (-) 1218 WP_218238123.1 type II secretion system F family protein Machinery gene
  KUD94_RS01330 (KUD94_01330) pilB 283977..285710 (-) 1734 WP_218238124.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KUD94_RS01335 (KUD94_01335) rpmG 285898..286068 (-) 171 WP_146911641.1 50S ribosomal protein L33 -
  KUD94_RS01340 (KUD94_01340) rpmB 286088..286321 (-) 234 WP_146911640.1 50S ribosomal protein L28 -
  KUD94_RS01345 (KUD94_01345) - 286591..288354 (+) 1764 WP_218238125.1 methyl-accepting chemotaxis protein -
  KUD94_RS01350 (KUD94_01350) - 288440..288802 (+) 363 WP_255568944.1 DsrE/DsrF/TusD sulfur relay family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44500.40 Da        Isoelectric Point: 9.4891

>NTDB_id=586536 KUD94_RS01325 WP_218238123.1 282733..283950(-) (pilC) [Comamonas sp. NLF-1-9]
MATAAAKGIKDFVFEWEGKDRNGKIVRGELRAGGENQVQASLRRQGVMPTKIKKRRMRSGKKIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTKLLNDIRNDVETGTSLNSAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT
EAIKSKIKSALMYPISVIIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLIVMAMSEFFVQYWWLIFGVLGGGFYFFM
QAWRRSEKMQMAMDRFLLKIPIFGDLINKSAVARWTRTLSTMFAAGVPLVEALDSVGGAAGNAVYAVATDKIQQEVSTGT
SLTAAMTNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEDEVDEMVKGLSSLLEPIIIVFLGTIIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=586536 KUD94_RS01325 WP_218238123.1 282733..283950(-) (pilC) [Comamonas sp. NLF-1-9]
ATGGCAACCGCTGCGGCCAAAGGCATCAAGGACTTCGTATTCGAGTGGGAGGGCAAGGACCGCAACGGCAAGATCGTGCG
CGGCGAGTTGCGCGCCGGCGGCGAAAACCAGGTCCAGGCCAGTCTGCGCCGCCAGGGCGTGATGCCCACCAAGATCAAGA
AGCGGCGCATGCGCTCGGGCAAGAAGATCAAGCCCAAGGACATCGCCCTGTTCACGCGCCAGATGGCGACGATGATGAAG
GCGGGCGTGCCGCTGCTGCAGGCTTTCGACATCGTCGGGCGCGGCAACACCAACCCGAGCGTGACCAAGCTGCTCAACGA
CATCCGCAACGACGTGGAGACCGGCACCTCGCTGAACTCGGCCTTTCGCAAGTACCCGATGTACTTCGACAGCCTGTACT
GCAACCTGGTGGAGGCGGGCGAAGCCGCCGGTATCCTGGAGGCACTGCTCGATCGCCTGGCCACCTACATGGAAAAGACC
GAGGCGATCAAGAGCAAGATCAAGTCTGCGCTGATGTACCCGATCTCGGTGATCATCGTCGCCTTCGTCGTGGTCACGGT
GATCATGATCTTCGTGATTCCGGCCTTCAAGGAGGTGTTCACCTCCTTCGGCGCCGACCTGCCCGCCCCCACGCTCATCG
TCATGGCCATGAGCGAATTCTTCGTGCAGTACTGGTGGCTGATCTTCGGCGTGCTGGGCGGCGGTTTCTATTTCTTCATG
CAGGCCTGGCGGCGCAGCGAGAAGATGCAGATGGCGATGGACCGCTTCCTGCTCAAGATTCCGATCTTCGGCGACCTGAT
CAACAAGTCGGCGGTGGCGCGCTGGACGCGCACGCTCTCGACCATGTTCGCCGCCGGCGTGCCGCTGGTCGAAGCGCTCG
ATTCGGTCGGCGGCGCGGCCGGCAACGCGGTCTACGCGGTTGCCACCGACAAGATCCAGCAGGAGGTCTCGACCGGCACC
AGCCTCACCGCCGCGATGACCAATGCCAACGTCTTCCCTTCCATGGTGCTGCAGATGTGCGCCATCGGTGAAGAGTCGGG
CTCGATCGATCACATGCTGGGCAAGGCGGCGGATTTCTACGAGGACGAGGTCGACGAGATGGTCAAGGGCCTGTCCAGCC
TGCTCGAGCCCATCATCATCGTCTTCCTGGGCACCATCATCGGTGGCATCGTGGTGTCCATGTACCTGCCCATCTTCAAG
CTCGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.198

99.753

0.551
  pilG Neisseria gonorrhoeae MS11

53.5

98.765

0.528
  pilG Neisseria meningitidis 44/76-A

53.25

98.765

0.526
  pilC Legionella pneumophila strain ERS1305867

50.754

98.272

0.499
  pilC Acinetobacter baylyi ADP1

50

98.272

0.491
  pilC Acinetobacter baumannii D1279779

48.866

98.025

0.479
  pilC Vibrio cholerae strain A1552

40.554

98.025

0.398
  pilC Vibrio campbellii strain DS40M4

39

98.765

0.385
  pilC Thermus thermophilus HB27

36.476

99.506

0.363