Detailed information NTG0586535

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KUD94_RS01320
• Genome accession: NZ_CP078069
• Coordinates: 281833..282729 (-)
• Length: 298 a.a.
• NCBI ID: WP_218238122.1
• Uniprot ID: -
• Organism: Comamonas sp. NLF-1-9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 276833..287729

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KUD94_RS01285 (KUD94_01285)	-	277809..278291 (-)	483	WP_218238115.1	monooxygenase family protein	-
KUD94_RS01290 (KUD94_01290)	-	278288..278947 (-)	660	WP_218238116.1	glutathione S-transferase family protein	-
KUD94_RS01295 (KUD94_01295)	-	278954..279244 (-)	291	WP_218238117.1	2TM domain-containing protein	-
KUD94_RS01300 (KUD94_01300)	-	279258..279821 (-)	564	WP_218238118.1	DUF6622 family protein	-
KUD94_RS01305 (KUD94_01305)	-	279965..280252 (-)	288	WP_218238119.1	DUF1330 domain-containing protein	-
KUD94_RS01310 (KUD94_01310)	zapD	280424..281179 (-)	756	WP_218238120.1	cell division protein ZapD	-
KUD94_RS01315 (KUD94_01315)	coaE	281209..281826 (-)	618	WP_218238121.1	dephospho-CoA kinase	-
KUD94_RS01320 (KUD94_01320)	pilD	281833..282729 (-)	897	WP_218238122.1	A24 family peptidase	Machinery gene
KUD94_RS01325 (KUD94_01325)	pilC	282733..283950 (-)	1218	WP_218238123.1	type II secretion system F family protein	Machinery gene
KUD94_RS01330 (KUD94_01330)	pilB	283977..285710 (-)	1734	WP_218238124.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KUD94_RS01335 (KUD94_01335)	rpmG	285898..286068 (-)	171	WP_146911641.1	50S ribosomal protein L33	-
KUD94_RS01340 (KUD94_01340)	rpmB	286088..286321 (-)	234	WP_146911640.1	50S ribosomal protein L28	-

Sequence

Protein

• Length: 298 a.a.
• Molecular weight: 31443.89 Da
• Isoelectric Point: 7.3786

>NTDB_id=586535 KUD94_RS01320 WP_218238122.1 281833..282729(-) (pilD) [Comamonas sp. NLF-1-9]
MTASVWTDAALLGVLGLLIGSFLNVVIHRLPRMMHNQWAQECAAWAAEQQSSDGAAAPAQAAPQPAAYNLLVPRSQCPHC
AHPIRWFENIPVFSYLALRGRCAGCGKSISLRYPAVELATGLLFFFCGLHWGLGPAGLAWSAFSAALVAAACIDWDTTLL
PDDITLPLLWGGLLASLLHYSGVALTDAVLGAMGGYLSLWSVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPIIL
LASVVGAVVGVALKLRGGLHEGKYVPFGPFLAGGGFVALLWGPQQVMHGLLGVLGLAA

Nucleotide

• Length: 897 bp

>NTDB_id=586535 KUD94_RS01320 WP_218238122.1 281833..282729(-) (pilD) [Comamonas sp. NLF-1-9]
ATGACGGCTTCGGTCTGGACGGACGCCGCGCTGCTCGGCGTCCTGGGCTTGCTGATCGGCAGCTTTCTGAACGTGGTGAT
CCACCGCCTGCCGCGCATGATGCACAACCAGTGGGCCCAGGAGTGCGCGGCCTGGGCCGCGGAGCAGCAAAGTTCCGACG
GTGCGGCGGCGCCAGCGCAGGCAGCGCCGCAGCCTGCGGCGTACAACCTGCTGGTGCCGCGCTCGCAGTGTCCGCACTGC
GCGCACCCGATACGCTGGTTTGAAAACATCCCCGTCTTCAGCTATCTGGCGCTGCGCGGGCGCTGCGCGGGCTGCGGCAA
GTCCATCAGCCTGCGCTATCCGGCGGTAGAACTCGCCACCGGGCTGCTGTTCTTCTTTTGCGGCCTGCACTGGGGCCTGG
GCCCGGCGGGCCTGGCCTGGAGCGCGTTCTCGGCCGCGCTGGTGGCCGCCGCCTGCATAGACTGGGACACCACCTTGCTG
CCCGACGACATCACGCTGCCGCTGCTCTGGGGCGGGCTGCTCGCGAGCCTTCTGCACTACAGCGGCGTTGCGCTCACCGA
CGCGGTCCTGGGCGCCATGGGCGGCTACCTCTCGCTGTGGAGCGTTTACTGGGCCTTCAAGCTCGCTACCGGCAAGGAAG
GCATGGGCTATGGCGACTTCAAGCTGTTTGCCGCGCTGGGTGCGTGGTTCGGCTGGCAGGCATTGGTGCCCATCATCTTG
TTGGCCTCGGTCGTCGGTGCGGTCGTGGGTGTGGCGCTCAAGCTCAGGGGCGGGCTGCACGAGGGCAAGTACGTGCCCTT
CGGGCCTTTTCTGGCCGGTGGCGGTTTCGTCGCCCTGCTCTGGGGCCCGCAGCAGGTCATGCATGGGCTGCTCGGCGTGC
TGGGCCTGGCGGCCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-130)

• Type IV leader peptidase family (Peptidase_A24) (144-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.246	94.295	0.483
pilD	Vibrio campbellii strain DS40M4	47.945	97.987	0.47
pilD	Acinetobacter baumannii D1279779	44.326	94.631	0.419
pilD	Acinetobacter nosocomialis M2	44.326	94.631	0.419
pilD	Neisseria gonorrhoeae MS11	43.446	89.597	0.389