Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EGT68_RS13375 Genome accession   NZ_CP078042
Coordinates   2807528..2808757 (+) Length   409 a.a.
NCBI ID   WP_125272053.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ_068     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2802528..2813757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT68_RS13340 (EGT68_013340) rimP 2803153..2803677 (-) 525 WP_004916844.1 ribosome maturation factor RimP -
  EGT68_RS13360 (EGT68_013360) secG 2804300..2804629 (-) 330 WP_004916847.1 preprotein translocase subunit SecG -
  EGT68_RS13365 (EGT68_013365) tpiA 2804642..2805433 (-) 792 WP_004958617.1 triose-phosphate isomerase -
  EGT68_RS13370 (EGT68_013370) pilB 2805779..2807503 (+) 1725 WP_005403575.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EGT68_RS13375 (EGT68_013375) pilC 2807528..2808757 (+) 1230 WP_125272053.1 type II secretion system F family protein Machinery gene
  EGT68_RS13380 (EGT68_013380) pilD 2808770..2809630 (+) 861 WP_004958611.1 A24 family peptidase Machinery gene
  EGT68_RS13385 (EGT68_013385) coaE 2809632..2810231 (+) 600 WP_087539736.1 dephospho-CoA kinase -
  EGT68_RS13390 (EGT68_013390) - 2810228..2811139 (-) 912 WP_004958607.1 DMT family transporter -
  EGT68_RS13395 (EGT68_013395) rlmB 2811170..2811919 (-) 750 WP_004916859.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  EGT68_RS13400 (EGT68_013400) - 2812109..2812435 (-) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44935.42 Da        Isoelectric Point: 9.9566

>NTDB_id=586480 EGT68_RS13375 WP_125272053.1 2807528..2808757(+) (pilC) [Acinetobacter junii strain AJ_068]
MAAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGFMKKKVTTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGLKSEVEGGNTFAGALKKYPQYFDTLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPITVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVGMSKWMQEYWFILIIVIGAIIA
AFLEAKKRSKKFRDGLDKLALRLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALTSTAGATNNVVYEEAVLKIREDVA
TGQQLQFAMRVSNRFPAMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGILVGGLVIAMYLP
IFQMGSVVG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=586480 EGT68_RS13375 WP_125272053.1 2807528..2808757(+) (pilC) [Acinetobacter junii strain AJ_068]
ATGGCAGCGAAAAAAGCGCAAATGATGCCTACTTTTGCCTATGAAGGGGTCGATCGTAAAGGGGCAAAAATTAAAGGGGA
ACTTCCAGCACGTAATATGGCTTTAGCAAAAGTCACATTACGTAAACAAGGTGTGACGATTAAAAACATTCGAGAAAAAC
GTAAAAATATTCTCGAAGGTTTTATGAAGAAAAAAGTAACGACTTTGGATATCACGGTTTTCACACGCCAATTAGCAACA
ATGATGAAAGCGGGTGTACCATTAGTACAAGGCTTTGAAATTGTTGCAGAAGGTTTAGAAAACCCATCTATGCGTGAGGT
CGTATTAGGATTAAAAAGTGAAGTTGAAGGTGGTAATACTTTCGCTGGCGCTTTAAAAAAATACCCTCAATACTTCGATA
CCTTATTTTGTTCACTCGTCGAATCAGGGGAACAGTCGGGTGCTCTTGAGACTATGCTAGATCGTGTCGCGGTATATAAG
GAAAAAAGTGAGTTACTCAAACAAAAAATTAAAAAAGCAATGAAGTATCCGATTACAGTGATTGTAGTTGCTGTGATCGT
TACAATTATTTTGATGGTGAAAGTAGTCCCTGTTTTCCAAGATCTGTTTAGTTCATTTGGTGCAGACTTACCCGCATTTA
CCAAAATGGTGGTTGGTATGTCCAAATGGATGCAAGAGTATTGGTTCATTCTAATTATCGTTATTGGTGCAATTATTGCT
GCATTTCTAGAAGCTAAAAAACGCAGTAAAAAATTTAGAGATGGCTTAGATAAACTTGCTTTAAGACTGCCAATCTTTGG
TGATCTCGTATACAAAGCAATTATTGCTCGCTACAGTCGTACACTAGCAACGACATTTGCGGCGGGCGTTCCTTTAATCG
ATGCGCTTACATCCACAGCAGGCGCAACCAATAATGTTGTTTATGAAGAAGCTGTACTTAAGATTAGAGAAGATGTTGCA
ACTGGACAACAACTGCAATTTGCTATGCGTGTTTCAAACCGCTTCCCTGCGATGGCAATTCAAATGGTCGCCATTGGTGA
AGAGTCTGGTGCACTTGATTCGATGTTAGATAAAGTTGCAACACACTACGAAAATGAAGTTGACAATGCAGTTGATGGTC
TGACTTCGATGATGGAACCATTAATCATGGCAATCCTAGGTATTCTTGTTGGTGGTCTAGTAATCGCCATGTACCTCCCA
ATTTTCCAAATGGGTTCTGTTGTCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

91.422

99.756

0.912
  pilC Acinetobacter baylyi ADP1

86.52

99.756

0.863
  pilC Pseudomonas stutzeri DSM 10701

60.591

99.267

0.601
  pilC Legionella pneumophila strain ERS1305867

53.58

99.022

0.531
  pilG Neisseria gonorrhoeae MS11

46.231

97.311

0.45
  pilG Neisseria meningitidis 44/76-A

46.231

97.311

0.45
  pilC Vibrio cholerae strain A1552

41.667

99.756

0.416
  pilC Vibrio campbellii strain DS40M4

39.756

100

0.399
  pilC Thermus thermophilus HB27

37.157

98.044

0.364