Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   EGT68_RS13380 Genome accession   NZ_CP078042
Coordinates   2808770..2809630 (+) Length   286 a.a.
NCBI ID   WP_004958611.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ_068     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2803770..2814630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT68_RS13360 (EGT68_013360) secG 2804300..2804629 (-) 330 WP_004916847.1 preprotein translocase subunit SecG -
  EGT68_RS13365 (EGT68_013365) tpiA 2804642..2805433 (-) 792 WP_004958617.1 triose-phosphate isomerase -
  EGT68_RS13370 (EGT68_013370) pilB 2805779..2807503 (+) 1725 WP_005403575.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EGT68_RS13375 (EGT68_013375) pilC 2807528..2808757 (+) 1230 WP_125272053.1 type II secretion system F family protein Machinery gene
  EGT68_RS13380 (EGT68_013380) pilD 2808770..2809630 (+) 861 WP_004958611.1 A24 family peptidase Machinery gene
  EGT68_RS13385 (EGT68_013385) coaE 2809632..2810231 (+) 600 WP_087539736.1 dephospho-CoA kinase -
  EGT68_RS13390 (EGT68_013390) - 2810228..2811139 (-) 912 WP_004958607.1 DMT family transporter -
  EGT68_RS13395 (EGT68_013395) rlmB 2811170..2811919 (-) 750 WP_004916859.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  EGT68_RS13400 (EGT68_013400) - 2812109..2812435 (-) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31958.59 Da        Isoelectric Point: 7.8116

>NTDB_id=586481 EGT68_RS13380 WP_004958611.1 2808770..2809630(+) (pilD) [Acinetobacter junii strain AJ_068]
MLSLFTYFIENPTALYLAVGLISLCIGSFLNVVIFRTPKMMEQEWHQECQMLLHPEQPIIDQSKLTLSQPVSTCPKCQTP
IKWFQNIPLISWLALRGKCGTCKNPISIRYPLIELLTMICSLIVVAVFGATIQMLFGLILTWTLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFAIYTTANAAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSM
VGAIIGIMLMKMRGENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=586481 EGT68_RS13380 WP_004958611.1 2808770..2809630(+) (pilD) [Acinetobacter junii strain AJ_068]
ATGCTTTCTTTATTTACTTATTTTATTGAAAATCCAACTGCACTTTACCTTGCAGTTGGATTAATTAGTCTGTGCATCGG
CAGCTTTTTAAATGTTGTGATCTTTCGCACTCCAAAAATGATGGAGCAAGAATGGCATCAAGAATGCCAAATGCTTTTGC
ACCCTGAACAGCCGATCATAGATCAGAGCAAGTTAACATTAAGTCAGCCAGTTTCTACCTGCCCTAAGTGTCAAACGCCA
ATTAAATGGTTCCAAAATATTCCTCTTATTAGTTGGTTAGCACTCCGTGGTAAATGTGGCACTTGCAAGAATCCAATTAG
CATTCGCTACCCGTTGATTGAATTACTTACTATGATCTGTTCATTGATCGTTGTGGCAGTATTCGGTGCAACAATACAGA
TGCTTTTCGGCTTAATTCTAACGTGGACACTTATTGCACTTACTTTTATTGATTTTGATACACAATTACTACCTGATCGC
TTTACGCTACCTTTGGCAGCATTAGGTCTGGGTATTAATACTTTTGCAATCTATACAACGGCTAACGCTGCGATCTGGGG
CTATTTAATCGGTTTTCTATGTCTTTGGATTGTATATTACCTATTTAAAGTCATCACCGGTAAAGAAGGCATGGGGTATG
GTGATTTTAAATTGCTTGCAGCACTTGGTGCATGGATGGGTCCTATGATGTTACCCCTCATCGTATTACTCTCTTCTATG
GTAGGTGCAATTATTGGTATTATGCTGATGAAAATGCGCGGTGAAAATCAACCTTTTGCATTTGGTCCTTATATTGCAAT
TGCCGGTTGGATTGCCTTTCTATGGGGTGAGCAAATTATGAAAGTGTATCTTGGGGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

82.168

100

0.822
  pilD Acinetobacter baumannii D1279779

81.818

100

0.818
  pilD Vibrio cholerae strain A1552

54.851

93.706

0.514
  pilD Vibrio campbellii strain DS40M4

48.601

100

0.486
  pilD Neisseria gonorrhoeae MS11

45.788

95.455

0.437