Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EGT69_RS02140 Genome accession   NZ_CP078018
Coordinates   461182..462408 (-) Length   408 a.a.
NCBI ID   WP_004916853.1    Uniprot ID   S7WGN8
Organism   Acinetobacter junii strain AJ_351     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 456182..467408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT69_RS02110 (EGT69_002110) - 457297..457479 (+) 183 WP_125297385.1 hypothetical protein -
  EGT69_RS02115 (EGT69_002115) - 457515..457841 (+) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -
  EGT69_RS02120 (EGT69_002120) rlmB 458033..458782 (+) 750 WP_004916859.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  EGT69_RS02125 (EGT69_002125) - 458813..459724 (+) 912 WP_125297384.1 DMT family transporter -
  EGT69_RS02130 (EGT69_002130) coaE 459721..460320 (-) 600 WP_125297383.1 dephospho-CoA kinase -
  EGT69_RS18300 (EGT69_002135) pilD 460322..461182 (-) 861 WP_004916856.1 prepilin peptidase Machinery gene
  EGT69_RS02140 (EGT69_002140) pilC 461182..462408 (-) 1227 WP_004916853.1 type II secretion system F family protein Machinery gene
  EGT69_RS02145 (EGT69_002145) pilB 462433..464157 (-) 1725 WP_125297382.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EGT69_RS02150 (EGT69_002150) tpiA 464503..465294 (+) 792 WP_005403576.1 triose-phosphate isomerase -
  EGT69_RS02155 (EGT69_002155) secG 465307..465636 (+) 330 WP_004916847.1 preprotein translocase subunit SecG -
  EGT69_RS02175 (EGT69_002175) rimP 466259..466783 (+) 525 WP_004916844.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45085.47 Da        Isoelectric Point: 9.8960

>NTDB_id=586365 EGT69_RS02140 WP_004916853.1 461182..462408(-) (pilC) [Acinetobacter junii strain AJ_351]
MVAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGFMKKKVTTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGLKNEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFTSFGADLPAFTQMVVNMSKWMQEYWFILIIAIGIFIT
GFLEAKKRSKKFRDTLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALTSTAGATNNVVYEEAVLKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=586365 EGT69_RS02140 WP_004916853.1 461182..462408(-) (pilC) [Acinetobacter junii strain AJ_351]
ATGGTAGCGAAAAAAGCGCAAATGATGCCTACTTTTGCCTACGAAGGGGTCGATCGTAAAGGGGCAAAAATTAAAGGGGA
ACTTCCAGCACGTAATATGGCTTTAGCAAAAGTCACCTTACGTAAACAAGGCGTGACGATTAAAAATATTCGAGAAAAAC
GTAAAAATATTCTCGAAGGTTTTATGAAGAAAAAAGTAACGACCTTGGATATCACAGTTTTCACACGCCAATTAGCAACA
ATGATGAAAGCGGGTGTGCCATTAGTACAAGGCTTTGAAATTGTTGCAGAAGGATTAGAAAACCCATCCATGCGTGAGGT
CGTATTAGGTTTAAAAAACGAAGTTGAAGGCGGTAATACTTTTGCTGGTGCTTTAAGAAAATATCCTCAATATTTCGACA
ATTTATTTTGTTCACTCGTCGAATCTGGTGAACAATCAGGCGCCCTTGAAACGATGCTAGATCGTGTTGCTGTTTATAAA
GAAAAAAGTGAATTACTCAAACAAAAAATTAAAAAAGCGATGAAATATCCTGCCACTGTTATCGTTGTAGCTGTAATTGT
AACAATCATTCTAATGGTTAAGGTAGTACCCGTTTTCCAAGACCTCTTTACATCCTTTGGAGCTGATCTACCAGCTTTTA
CCCAAATGGTTGTAAATATGTCTAAATGGATGCAAGAGTATTGGTTTATCCTCATTATTGCTATAGGTATTTTTATCACA
GGATTCTTGGAGGCAAAAAAACGTAGTAAAAAGTTTAGAGATACATTGGATAAGCTTGCTCTAAAATTGCCGATTTTTGG
AGATCTTGTATATAAAGCAATTATTGCTCGCTATAGCCGCACTTTAGCTACCACTTTTGCTGCAGGCGTACCATTAATTG
ATGCGCTTACATCCACAGCAGGCGCAACCAATAATGTTGTTTATGAAGAAGCTGTACTTAAAATTAGAGAAGATGTTGCG
ACTGGACAACAGCTCCAATTCGCGATGCGTGTTTCAAACCGCTTCCCTTCGATGGCAATTCAAATGGTTGCAATTGGTGA
AGAGTCTGGCGCTCTTGATTCGATGTTAGATAAAGTCGCAACACACTATGAAAATGAAGTCGACAACGCAGTAGATGGTC
TCACTTCAATGATGGAACCTCTTATTATGGCAATTCTTGGTGTATTAGTAGGCGGTCTCGTTATTGCCATGTATCTACCA
ATCTTCCAGATGGGTTCAGTAGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7WGN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

92.402

100

0.924
  pilC Acinetobacter baylyi ADP1

87.01

100

0.87
  pilC Pseudomonas stutzeri DSM 10701

60.688

99.755

0.605
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria gonorrhoeae MS11

46.734

97.549

0.456
  pilG Neisseria meningitidis 44/76-A

46.482

97.549

0.453
  pilC Vibrio cholerae strain A1552

42.26

99.755

0.422
  pilC Vibrio campbellii strain DS40M4

41.584

99.02

0.412
  pilC Thermus thermophilus HB27

36.908

98.284

0.363