Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CLOPA_RS23110 Genome accession   NC_021182
Coordinates   4973637..4974071 (-) Length   144 a.a.
NCBI ID   WP_015617832.1    Uniprot ID   -
Organism   Clostridium pasteurianum BC1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4968637..4979071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLOPA_RS23090 (Clopa_4888) - 4968779..4970221 (-) 1443 WP_015617828.1 PLP-dependent aminotransferase family protein -
  CLOPA_RS23095 (Clopa_4889) - 4970342..4971595 (-) 1254 WP_015617829.1 Nramp family divalent metal transporter -
  CLOPA_RS23100 (Clopa_4890) - 4971613..4972842 (-) 1230 WP_015617830.1 CBS domain-containing protein -
  CLOPA_RS23105 (Clopa_4891) rpsR 4973326..4973610 (-) 285 WP_015617831.1 30S ribosomal protein S18 -
  CLOPA_RS23110 (Clopa_4892) ssbA 4973637..4974071 (-) 435 WP_015617832.1 single-stranded DNA-binding protein Machinery gene
  CLOPA_RS23115 (Clopa_4893) rpsF 4974092..4974379 (-) 288 WP_015617833.1 30S ribosomal protein S6 -
  CLOPA_RS23120 (Clopa_4894) - 4974479..4974682 (-) 204 WP_015617834.1 DUF951 domain-containing protein -
  CLOPA_RS23125 (Clopa_4895) - 4974675..4975565 (-) 891 WP_015617835.1 mechanosensitive ion channel family protein -
  CLOPA_RS23130 (Clopa_4896) - 4975843..4976529 (+) 687 WP_015617836.1 LysE family transporter -
  CLOPA_RS23135 (Clopa_4897) ytvI 4976619..4977671 (+) 1053 WP_015617837.1 sporulation integral membrane protein YtvI -
  CLOPA_RS23140 (Clopa_4898) yyaC 4977731..4978315 (+) 585 WP_015617838.1 spore protease YyaC -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15834.70 Da        Isoelectric Point: 4.8013

>NTDB_id=58566 CLOPA_RS23110 WP_015617832.1 4973637..4974071(-) (ssbA) [Clostridium pasteurianum BC1]
MNRVVLIGRLTKDPELKFTPGSGNAVATFTIAVDRRMPNRDGVREADFISIVVWGKQAESTANYMSKGKLIGISGRIQTR
SYEAKDGSRRYVTEVVADEIQFLEWGGNKSSAPKDEFRSNSTGDMNESDIGADITPIDDGDIPF

Nucleotide


Download         Length: 435 bp        

>NTDB_id=58566 CLOPA_RS23110 WP_015617832.1 4973637..4974071(-) (ssbA) [Clostridium pasteurianum BC1]
ATGAATAGAGTTGTTTTAATAGGCAGACTTACTAAAGACCCAGAGCTTAAGTTTACTCCGGGAAGTGGTAATGCCGTTGC
CACCTTTACTATAGCGGTTGATAGAAGAATGCCTAATAGAGATGGTGTAAGGGAAGCGGATTTTATTTCCATAGTAGTAT
GGGGAAAGCAAGCTGAATCTACAGCTAACTATATGAGTAAGGGTAAGCTTATAGGTATCAGTGGTAGAATACAAACTAGA
TCTTATGAAGCTAAGGATGGCAGCAGAAGATATGTTACCGAGGTAGTAGCTGATGAAATACAATTCCTTGAATGGGGAGG
CAATAAATCCTCAGCACCAAAGGACGAATTTAGATCTAATTCTACAGGAGATATGAACGAATCAGATATCGGAGCAGATA
TAACTCCAATTGATGATGGTGACATACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

43.503

100

0.535
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.69

100

0.41
  ssbB/cilA Streptococcus mitis NCTC 12261

40.69

100

0.41
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

100

0.403
  ssb Latilactobacillus sakei subsp. sakei 23K

55.769

72.222

0.403
  ssbA Streptococcus mutans UA159

40.559

99.306

0.403
  ssbB/cilA Streptococcus pneumoniae Rx1

39.31

100

0.396
  ssbB/cilA Streptococcus pneumoniae D39

39.31

100

0.396
  ssbB/cilA Streptococcus pneumoniae R6

39.31

100

0.396
  ssbB/cilA Streptococcus mitis SK321

39.31

100

0.396
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.885

72.222

0.382

Multiple sequence alignment