Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   I872_RS10640 Genome accession   NC_021175
Coordinates   2139790..2140968 (+) Length   392 a.a.
NCBI ID   WP_015606090.1    Uniprot ID   -
Organism   Streptococcus cristatus AS 1.3089     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2134790..2145968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS10600 (I872_10655) sdaAB 2135562..2136233 (-) 672 WP_015606087.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  I872_RS10615 (I872_10660) comE/comE2 2136577..2137320 (-) 744 WP_005591384.1 competence system response regulator transcription factor ComE Regulator
  I872_RS10620 (I872_10665) comD/comD1 2137317..2138660 (-) 1344 WP_172456456.1 GHKL domain-containing protein Regulator
  I872_RS10625 comC 2138686..2138814 (-) 129 WP_041826850.1 competence protein Regulator
  I872_RS10635 (I872_10670) rlmH 2139108..2139587 (-) 480 WP_015606089.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  I872_RS10640 (I872_10675) htrA 2139790..2140968 (+) 1179 WP_015606090.1 S1C family serine protease Regulator
  I872_RS10645 (I872_10680) spo0J 2141031..2141792 (+) 762 WP_015606091.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 392 a.a.        Molecular weight: 41335.44 Da        Isoelectric Point: 5.4758

>NTDB_id=58493 I872_RS10640 WP_015606090.1 2139790..2140968(+) (htrA) [Streptococcus cristatus AS 1.3089]
MKNASNFFKKSLLLFIVLVVGFIGGSLGNLATAFLNNKMANIGPSSSKTTVSTSYKNTTDTTKAVKKVQNAVVSVITYTG
SNQEGVINNESTSDPQVASEGSGVIYKKEGKYAYLVTNTHVLNGATNPDILLADGSKVPGEVVGSDVYSDISVVRINSEK
VKDVAEFGDSNSLTVGETAIAIGSPLGTEYANSVTQGIISSLGRNVTLQSEDGQNISTTALQTDAAINPGNSGGPLINIQ
GQVIGITSSKISHNGQTAVEGMGFAIPSNDVVNIIKQLEKTGTVTRPALGIQMLDLSNIATSDLSKLRLPSSVKSGILVR
SVQEGMPAENKLQKYDVITKVDDKDVESTSDLQSALYRHSLGDELKVTYFRDGKEATTTIKLTKSTQDLSDN

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=58493 I872_RS10640 WP_015606090.1 2139790..2140968(+) (htrA) [Streptococcus cristatus AS 1.3089]
ATGAAAAACGCTTCAAATTTCTTTAAAAAATCTTTGTTGCTTTTTATTGTTTTAGTTGTAGGATTTATTGGCGGAAGCCT
AGGAAATTTAGCCACTGCATTTCTTAATAATAAAATGGCTAATATTGGTCCTTCTAGCTCAAAGACCACTGTATCAACGT
CTTATAAAAACACAACCGACACCACAAAGGCTGTAAAAAAGGTTCAAAATGCAGTTGTATCAGTAATTACTTATACAGGT
TCAAATCAAGAAGGAGTGATCAATAATGAATCAACCAGTGATCCTCAAGTAGCTAGTGAGGGATCTGGTGTTATTTATAA
GAAGGAAGGAAAATATGCCTACCTTGTTACCAATACTCACGTGCTAAATGGAGCAACAAATCCTGATATTCTACTAGCAG
ATGGTAGTAAGGTTCCTGGTGAGGTCGTTGGTTCAGATGTTTATTCTGATATTTCTGTAGTAAGAATTAACTCTGAAAAG
GTGAAAGATGTAGCTGAATTTGGAGATTCCAACTCCCTGACAGTAGGAGAAACTGCTATTGCCATCGGAAGCCCTCTCGG
AACAGAATACGCTAACTCTGTTACACAAGGAATCATCTCTAGTTTAGGCAGAAATGTAACTCTCCAATCTGAAGACGGCC
AAAATATTTCCACAACTGCCTTGCAAACAGATGCTGCTATCAACCCTGGTAACTCTGGCGGTCCACTCATCAATATCCAA
GGACAAGTTATCGGTATTACGTCCAGCAAAATCTCTCACAATGGTCAAACTGCTGTAGAAGGCATGGGCTTTGCAATTCC
ATCAAACGATGTTGTCAATATTATCAAGCAATTAGAGAAAACTGGAACAGTAACTCGTCCTGCTCTGGGTATCCAAATGC
TCGATTTATCTAATATCGCCACTTCTGACTTATCAAAATTACGTCTGCCTTCATCTGTAAAATCAGGTATCCTTGTCCGC
TCTGTGCAAGAAGGAATGCCTGCTGAAAATAAACTTCAGAAATACGATGTCATCACAAAAGTTGACGATAAGGATGTTGA
GTCAACCAGTGATTTACAATCTGCTCTCTACAGACACTCTCTGGGAGATGAGTTGAAAGTGACTTACTTTAGGGATGGTA
AAGAAGCTACTACAACCATTAAATTGACCAAATCAACCCAGGACTTAAGTGACAACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus gordonii str. Challis substr. CH1

67.595

100

0.681

  htrA Streptococcus pneumoniae Rx1

63.939

99.745

0.638

  htrA Streptococcus pneumoniae D39

63.939

99.745

0.638

  htrA Streptococcus pneumoniae R6

63.939

99.745

0.638

  htrA Streptococcus pneumoniae TIGR4

63.939

99.745

0.638

  htrA Streptococcus mitis NCTC 12261

63.939

99.745

0.638

  htrA Streptococcus mutans UA159

54.342

100

0.559


Multiple sequence alignment