Detailed information NTG0058484

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: I872_RS09730
• Genome accession: NC_021175
• Coordinates: 1974948..1975382 (-)
• Length: 144 a.a.
• NCBI ID: WP_041826842.1
• Uniprot ID: -
• Organism: Streptococcus cristatus AS 1.3089
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1969948..1980382

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I872_RS09700 (I872_09710)	-	1970233..1971120 (+)	888	WP_041826841.1	RluA family pseudouridine synthase	-
I872_RS09705 (I872_09715)	-	1971602..1972798 (-)	1197	Protein_1906	acetate kinase	-
I872_RS09710 (I872_09720)	comYH	1972834..1973799 (-)	966	WP_015605914.1	class I SAM-dependent methyltransferase	Machinery gene
I872_RS09715 (I872_09725)	comGG	1973880..1974287 (-)	408	WP_015605915.1	competence type IV pilus minor pilin ComGG	-
I872_RS09720 (I872_09730)	comGF/cglF	1974268..1974705 (-)	438	WP_015605916.1	competence type IV pilus minor pilin ComGF	Machinery gene
I872_RS09725 (I872_09735)	comGE/cglE	1974689..1974958 (-)	270	WP_015605917.1	competence type IV pilus minor pilin ComGE	Machinery gene
I872_RS09730 (I872_09740)	comYD	1974948..1975382 (-)	435	WP_041826842.1	competence type IV pilus minor pilin ComGD	Machinery gene
I872_RS09735 (I872_09745)	comYC	1975342..1975659 (-)	318	WP_015605919.1	competence type IV pilus major pilin ComGC	Machinery gene
I872_RS09740 (I872_09750)	comYB	1975656..1976672 (-)	1017	WP_015605920.1	competence type IV pilus assembly protein ComGB	Machinery gene
I872_RS09745 (I872_09755)	comYA	1976620..1977561 (-)	942	WP_015605921.1	competence type IV pilus ATPase ComGA	Machinery gene
I872_RS09750 (I872_09760)	-	1977646..1978017 (-)	372	WP_015605922.1	DUF1033 family protein	-
I872_RS09755	-	1978152..1979420 (-)	1269	WP_041826843.1	CapA family protein	-
I872_RS09760 (I872_09770)	comW	1979663..1979890 (-)	228	WP_015605924.1	sigma(X)-activator ComW	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16342.83 Da
• Isoelectric Point: 9.3348

>NTDB_id=58484 I872_RS09730 WP_041826842.1 1974948..1975382(-) (comYD) [Streptococcus cristatus AS 1.3089]
MEKTVVKLVQLRIKAFTLLESLLALFVVSFILLGLSGSVQAGFNQVQEQLFFLEFEHLYQESQKLSLAGHEKIKLTISER
KISNGYQQVEFPKTLQEHAPQTIQFDQAGGNSSLSKIVFQTEDKRVVYQLYIGNGKFKKTTNEG

Nucleotide

• Length: 435 bp

>NTDB_id=58484 I872_RS09730 WP_041826842.1 1974948..1975382(-) (comYD) [Streptococcus cristatus AS 1.3089]
ATGGAAAAAACAGTAGTGAAGCTCGTGCAGTTGCGGATTAAGGCTTTTACGCTGCTGGAAAGTCTCCTGGCTCTATTTGT
GGTCAGCTTCATTTTATTAGGTCTATCTGGCTCTGTTCAGGCTGGTTTCAATCAAGTGCAGGAGCAATTATTTTTCCTGG
AATTTGAGCATCTTTATCAGGAGAGTCAAAAGCTGAGTCTGGCTGGGCATGAAAAGATAAAGCTGACCATTTCGGAGCGT
AAGATTTCCAATGGCTACCAGCAGGTGGAGTTTCCCAAGACCTTGCAGGAGCATGCTCCTCAGACCATTCAGTTTGATCA
GGCTGGCGGGAATTCTTCGCTCAGCAAGATTGTTTTTCAAACGGAGGATAAAAGGGTTGTTTACCAGCTTTATATTGGCA
ACGGAAAATTTAAAAAGACGACGAATGAAGGCTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus gordonii str. Challis substr. CH1	62.676	98.611	0.618
comGD/cglD	Streptococcus mitis NCTC 12261	55.814	89.583	0.5
comGD/cglD	Streptococcus pneumoniae Rx1	55.906	88.194	0.493
comGD/cglD	Streptococcus pneumoniae D39	55.906	88.194	0.493
comGD/cglD	Streptococcus pneumoniae R6	55.906	88.194	0.493
comGD/cglD	Streptococcus mitis SK321	55.906	88.194	0.493
comGD/cglD	Streptococcus pneumoniae TIGR4	55.118	88.194	0.486
comYD	Streptococcus mutans UA140	53.846	90.278	0.486
comYD	Streptococcus mutans UA159	53.846	90.278	0.486