Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | KTR68_RS13825 | Genome accession | NZ_CP077757 |
| Coordinates | 2798836..2799264 (+) | Length | 142 a.a. |
| NCBI ID | WP_031584877.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain WHC07 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2793836..2804264
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KTR68_RS13755 | - | 2794027..2794242 (+) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| KTR68_RS13760 | - | 2794231..2794560 (-) | 330 | WP_000128907.1 | hypothetical protein | - |
| KTR68_RS13765 | - | 2794611..2795367 (+) | 757 | Protein_2688 | phage antirepressor KilAC domain-containing protein | - |
| KTR68_RS13770 | - | 2795383..2795580 (+) | 198 | WP_001148860.1 | hypothetical protein | - |
| KTR68_RS13775 | - | 2795567..2795947 (-) | 381 | WP_000773059.1 | DUF2513 domain-containing protein | - |
| KTR68_RS13780 | - | 2796014..2796259 (+) | 246 | WP_001025401.1 | DUF2829 domain-containing protein | - |
| KTR68_RS13785 | - | 2796228..2796593 (-) | 366 | WP_001128433.1 | hypothetical protein | - |
| KTR68_RS13790 | - | 2796648..2796863 (+) | 216 | WP_001097552.1 | hypothetical protein | - |
| KTR68_RS13795 | - | 2796890..2797153 (+) | 264 | WP_001124196.1 | helix-turn-helix domain-containing protein | - |
| KTR68_RS13800 | - | 2797166..2797327 (+) | 162 | WP_001285948.1 | DUF1270 domain-containing protein | - |
| KTR68_RS13805 | - | 2797422..2797724 (+) | 303 | WP_001608484.1 | DUF2482 family protein | - |
| KTR68_RS13810 | - | 2797729..2797989 (+) | 261 | WP_031584888.1 | DUF1108 family protein | - |
| KTR68_RS13815 | - | 2797999..2798220 (+) | 222 | WP_000815401.1 | DUF2483 family protein | - |
| KTR68_RS13820 | - | 2798213..2798836 (+) | 624 | WP_000139720.1 | DUF1071 domain-containing protein | - |
| KTR68_RS13825 | ssbA | 2798836..2799264 (+) | 429 | WP_031584877.1 | single-stranded DNA-binding protein | Machinery gene |
| KTR68_RS13830 | - | 2799278..2799952 (+) | 675 | WP_031584874.1 | putative HNHc nuclease | - |
| KTR68_RS13835 | - | 2799945..2800697 (+) | 753 | WP_031584871.1 | DnaD domain protein | - |
| KTR68_RS13840 | - | 2800697..2801053 (+) | 357 | WP_001132243.1 | hypothetical protein | - |
| KTR68_RS13845 | - | 2801050..2802291 (+) | 1242 | WP_031584867.1 | DnaB helicase C-terminal domain-containing protein | - |
| KTR68_RS13850 | - | 2802288..2802503 (+) | 216 | WP_031584864.1 | hypothetical protein | - |
| KTR68_RS13855 | - | 2802506..2802727 (+) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| KTR68_RS13860 | - | 2802737..2803144 (+) | 408 | WP_029549553.1 | RusA family crossover junction endodeoxyribonuclease | - |
| KTR68_RS13865 | - | 2803144..2803329 (+) | 186 | WP_017804689.1 | DUF3113 family protein | - |
| KTR68_RS13870 | - | 2803330..2803692 (+) | 363 | WP_000536051.1 | SA1788 family PVL leukocidin-associated protein | - |
| KTR68_RS13875 | - | 2803692..2803946 (+) | 255 | WP_031584845.1 | DUF3310 domain-containing protein | - |
| KTR68_RS13880 | - | 2803946..2804194 (+) | 249 | WP_060474161.1 | SAV1978 family virulence-associated passenger protein | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 15978.55 Da Isoelectric Point: 6.9799
>NTDB_id=582813 KTR68_RS13825 WP_031584877.1 2798836..2799264(+) (ssbA) [Staphylococcus aureus strain WHC07]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVAADSVQFLEPKNSNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVAADSVQFLEPKNSNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
Nucleotide
Download Length: 429 bp
>NTDB_id=582813 KTR68_RS13825 WP_031584877.1 2798836..2799264(+) (ssbA) [Staphylococcus aureus strain WHC07]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATCGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTGTTTGTTACAGAAGTAGCAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAGCAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATCGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTGTTTGTTACAGAAGTAGCAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAGCAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.302 |
100 |
0.718 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.606 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
74.648 |
0.444 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.657 |
100 |
0.43 |
| ssbA | Streptococcus mutans UA159 |
41.549 |
100 |
0.415 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
41.549 |
100 |
0.415 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
41.549 |
100 |
0.415 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.845 |
100 |
0.408 |