Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | KTR65_RS14010 | Genome accession | NZ_CP077755 |
| Coordinates | 2835485..2835913 (+) | Length | 142 a.a. |
| NCBI ID | WP_016187439.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain WHC09 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2826825..2845985 | 2835485..2835913 | within | 0 |
Gene organization within MGE regions
Location: 2826825..2845985
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KTR65_RS13925 | - | 2826825..2827871 (-) | 1047 | WP_031886361.1 | tyrosine-type recombinase/integrase | - |
| KTR65_RS14310 | - | 2828256..2828606 (+) | 351 | WP_223200492.1 | hypothetical protein | - |
| KTR65_RS13935 | - | 2828752..2828935 (-) | 184 | Protein_2722 | hypothetical protein | - |
| KTR65_RS13940 | - | 2829031..2829951 (-) | 921 | WP_000348133.1 | exonuclease domain-containing protein | - |
| KTR65_RS13945 | - | 2829967..2830599 (-) | 633 | WP_031915307.1 | LexA family transcriptional regulator | - |
| KTR65_RS13950 | - | 2830753..2830980 (+) | 228 | WP_015978369.1 | helix-turn-helix transcriptional regulator | - |
| KTR65_RS13955 | - | 2831003..2831779 (+) | 777 | WP_217838621.1 | Rha family transcriptional regulator | - |
| KTR65_RS13960 | - | 2831808..2832005 (+) | 198 | WP_001148860.1 | hypothetical protein | - |
| KTR65_RS13965 | - | 2831992..2832372 (-) | 381 | WP_000773059.1 | DUF2513 domain-containing protein | - |
| KTR65_RS13970 | - | 2832439..2832582 (+) | 144 | WP_000939498.1 | hypothetical protein | - |
| KTR65_RS13975 | - | 2832592..2833245 (-) | 654 | WP_031886359.1 | hypothetical protein | - |
| KTR65_RS13980 | - | 2833317..2833538 (+) | 222 | WP_000594790.1 | hypothetical protein | - |
| KTR65_RS13985 | - | 2833531..2833692 (+) | 162 | WP_000066017.1 | DUF1270 domain-containing protein | - |
| KTR65_RS13990 | - | 2833786..2834088 (+) | 303 | WP_113525271.1 | DUF2482 family protein | - |
| KTR65_RS13995 | - | 2834093..2834353 (+) | 261 | WP_021285962.1 | DUF1108 family protein | - |
| KTR65_RS14000 | - | 2834368..2834847 (+) | 480 | WP_016187438.1 | siphovirus Gp157 family protein | - |
| KTR65_RS14005 | - | 2834847..2835485 (+) | 639 | WP_217838622.1 | ERF family protein | - |
| KTR65_RS14010 | ssbA | 2835485..2835913 (+) | 429 | WP_016187439.1 | single-stranded DNA-binding protein | Machinery gene |
| KTR65_RS14015 | - | 2835927..2836601 (+) | 675 | WP_217838623.1 | putative HNHc nuclease | - |
| KTR65_RS14020 | - | 2836594..2837358 (+) | 765 | WP_165619098.1 | DnaD domain protein | - |
| KTR65_RS14025 | - | 2837358..2837714 (+) | 357 | WP_053504596.1 | hypothetical protein | - |
| KTR65_RS14030 | - | 2837711..2838952 (+) | 1242 | WP_217838624.1 | DnaB helicase C-terminal domain-containing protein | - |
| KTR65_RS14035 | - | 2838949..2839164 (+) | 216 | WP_031584864.1 | hypothetical protein | - |
| KTR65_RS14040 | - | 2839167..2839388 (+) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| KTR65_RS14045 | - | 2839398..2839805 (+) | 408 | WP_029549553.1 | RusA family crossover junction endodeoxyribonuclease | - |
| KTR65_RS14050 | - | 2839805..2839990 (+) | 186 | WP_017804689.1 | DUF3113 family protein | - |
| KTR65_RS14055 | - | 2839991..2840353 (+) | 363 | WP_000536051.1 | SA1788 family PVL leukocidin-associated protein | - |
| KTR65_RS14060 | - | 2840353..2840607 (+) | 255 | WP_031584845.1 | DUF3310 domain-containing protein | - |
| KTR65_RS14065 | - | 2840607..2840855 (+) | 249 | WP_060474161.1 | SAV1978 family virulence-associated passenger protein | - |
| KTR65_RS14070 | - | 2840869..2841075 (+) | 207 | WP_000693989.1 | hypothetical protein | - |
| KTR65_RS14075 | - | 2841078..2841479 (+) | 402 | WP_031584831.1 | hypothetical protein | - |
| KTR65_RS14080 | - | 2841476..2841823 (+) | 348 | WP_000979209.1 | YopX family protein | - |
| KTR65_RS14085 | - | 2841820..2842128 (+) | 309 | WP_031584824.1 | hypothetical protein | - |
| KTR65_RS14090 | - | 2842121..2842375 (+) | 255 | WP_031584821.1 | DUF1024 family protein | - |
| KTR65_RS14095 | - | 2842362..2842532 (+) | 171 | WP_000714407.1 | hypothetical protein | - |
| KTR65_RS14100 | - | 2842525..2843019 (+) | 495 | WP_031584817.1 | dUTPase | - |
| KTR65_RS14105 | - | 2843072..2843314 (+) | 243 | WP_031584815.1 | hypothetical protein | - |
| KTR65_RS14110 | - | 2843311..2843517 (+) | 207 | WP_031584812.1 | DUF1381 domain-containing protein | - |
| KTR65_RS14115 | - | 2843514..2843666 (+) | 153 | WP_000595263.1 | transcriptional activator RinB | - |
| KTR65_RS14120 | - | 2843734..2843934 (+) | 201 | WP_000265252.1 | DUF1514 family protein | - |
| KTR65_RS14125 | - | 2844131..2844631 (+) | 501 | Protein_2760 | helicase-related protein | - |
| KTR65_RS14130 | - | 2844644..2845081 (+) | 438 | WP_094314233.1 | transcriptional regulator | - |
| KTR65_RS14135 | - | 2845238..2845552 (+) | 315 | WP_061642304.1 | HNH endonuclease | - |
| KTR65_RS14140 | - | 2845680..2845985 (+) | 306 | WP_000778933.1 | P27 family phage terminase small subunit | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 16066.57 Da Isoelectric Point: 5.8724
>NTDB_id=582771 KTR65_RS14010 WP_016187439.1 2835485..2835913(+) (ssbA) [Staphylococcus aureus strain WHC09]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQQNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQQNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
Nucleotide
Download Length: 429 bp
>NTDB_id=582771 KTR65_RS14010 WP_016187439.1 2835485..2835913(+) (ssbA) [Staphylococcus aureus strain WHC09]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCGAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACCTCCCGTTCTGA
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCGAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACCTCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.721 |
100 |
0.711 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.62 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
74.648 |
0.437 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.657 |
100 |
0.43 |
| ssbA | Streptococcus mutans UA159 |
41.549 |
100 |
0.415 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.141 |
100 |
0.401 |