Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | KTE72_RS04635 | Genome accession | NZ_CP077741 |
| Coordinates | 949412..949840 (+) | Length | 142 a.a. |
| NCBI ID | WP_016187439.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain NL1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 940539..988668 | 949412..949840 | within | 0 |
Gene organization within MGE regions
Location: 940539..988668
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KTE72_RS04550 (KTE72_04520) | sufB | 940539..941936 (+) | 1398 | WP_001074405.1 | Fe-S cluster assembly protein SufB | - |
| KTE72_RS04555 (KTE72_04525) | - | 942004..943053 (-) | 1050 | WP_001145730.1 | tyrosine-type recombinase/integrase | - |
| KTE72_RS04560 (KTE72_04530) | - | 943120..943362 (-) | 243 | WP_016187262.1 | hypothetical protein | - |
| KTE72_RS04565 (KTE72_04535) | - | 943373..944356 (-) | 984 | WP_021285964.1 | glycosyltransferase family 2 protein | - |
| KTE72_RS04570 (KTE72_04540) | - | 944408..945082 (-) | 675 | WP_000142628.1 | XRE family transcriptional regulator | - |
| KTE72_RS04575 (KTE72_04545) | - | 945274..945513 (+) | 240 | WP_016187264.1 | helix-turn-helix domain-containing protein | - |
| KTE72_RS04580 (KTE72_04550) | - | 945528..945689 (+) | 162 | WP_001153175.1 | hypothetical protein | - |
| KTE72_RS04585 (KTE72_04555) | - | 945682..945918 (-) | 237 | WP_021285963.1 | hypothetical protein | - |
| KTE72_RS04590 (KTE72_04560) | - | 945983..946723 (+) | 741 | WP_001576117.1 | phage antirepressor KilAC domain-containing protein | - |
| KTE72_RS04595 (KTE72_04565) | - | 946748..946951 (+) | 204 | Protein_898 | hypothetical protein | - |
| KTE72_RS04600 (KTE72_04570) | - | 946919..947164 (-) | 246 | WP_016187267.1 | hypothetical protein | - |
| KTE72_RS04605 (KTE72_04575) | - | 947235..947456 (+) | 222 | WP_000977381.1 | hypothetical protein | - |
| KTE72_RS04610 (KTE72_04580) | - | 947449..947610 (+) | 162 | WP_000048124.1 | DUF1270 family protein | - |
| KTE72_RS04615 (KTE72_04585) | - | 947713..948015 (+) | 303 | WP_000163429.1 | DUF2482 family protein | - |
| KTE72_RS04620 (KTE72_04590) | - | 948020..948280 (+) | 261 | WP_021285962.1 | DUF1108 family protein | - |
| KTE72_RS04625 (KTE72_04595) | - | 948295..948774 (+) | 480 | WP_016187438.1 | siphovirus Gp157 family protein | - |
| KTE72_RS04630 (KTE72_04600) | - | 948774..949412 (+) | 639 | WP_001043063.1 | ERF family protein | - |
| KTE72_RS04635 (KTE72_04605) | ssbA | 949412..949840 (+) | 429 | WP_016187439.1 | single-stranded DNA-binding protein | Machinery gene |
| KTE72_RS04640 (KTE72_04610) | - | 949854..950549 (+) | 696 | WP_015980404.1 | putative HNHc nuclease | - |
| KTE72_RS04645 (KTE72_04615) | - | 950521..951324 (+) | 804 | WP_000504986.1 | phage replisome organizer N-terminal domain-containing protein | - |
| KTE72_RS04650 (KTE72_04620) | - | 951334..952107 (+) | 774 | WP_021285961.1 | ATP-binding protein | - |
| KTE72_RS04655 (KTE72_04625) | - | 952101..952262 (+) | 162 | WP_000237154.1 | hypothetical protein | - |
| KTE72_RS04660 (KTE72_04630) | - | 952275..952496 (+) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| KTE72_RS04665 (KTE72_04635) | - | 952506..952910 (+) | 405 | WP_000049794.1 | DUF1064 domain-containing protein | - |
| KTE72_RS04670 (KTE72_04640) | - | 952915..953100 (+) | 186 | WP_001187243.1 | DUF3113 family protein | - |
| KTE72_RS04675 (KTE72_04645) | - | 953101..953406 (+) | 306 | WP_000101252.1 | hypothetical protein | - |
| KTE72_RS04680 (KTE72_04650) | - | 953534..953893 (+) | 360 | WP_016187441.1 | SA1788 family PVL leukocidin-associated protein | - |
| KTE72_RS04685 (KTE72_04655) | - | 953893..954150 (+) | 258 | WP_021285960.1 | DUF3310 domain-containing protein | - |
| KTE72_RS04690 (KTE72_04660) | - | 954153..954353 (+) | 201 | WP_000224767.1 | hypothetical protein | - |
| KTE72_RS04695 (KTE72_04665) | - | 954350..955039 (+) | 690 | WP_000097190.1 | N-6 DNA methylase | - |
| KTE72_RS04700 (KTE72_04670) | - | 955053..955265 (+) | 213 | WP_000695732.1 | hypothetical protein | - |
| KTE72_RS04705 (KTE72_04675) | - | 955262..955668 (+) | 407 | Protein_920 | hypothetical protein | - |
| KTE72_RS04710 (KTE72_04680) | - | 955665..955856 (+) | 192 | WP_021285959.1 | hypothetical protein | - |
| KTE72_RS04715 (KTE72_04685) | - | 955856..956242 (+) | 387 | Protein_922 | acetyltransferase | - |
| KTE72_RS04720 (KTE72_04690) | - | 956219..956467 (+) | 249 | WP_025176536.1 | DUF1024 family protein | - |
| KTE72_RS04725 (KTE72_04695) | - | 956460..956996 (+) | 537 | WP_000185693.1 | dUTPase | - |
| KTE72_RS04730 (KTE72_04700) | - | 957033..957239 (+) | 207 | WP_000195770.1 | DUF1381 domain-containing protein | - |
| KTE72_RS04735 (KTE72_04705) | - | 957236..957439 (+) | 204 | WP_016187270.1 | hypothetical protein | - |
| KTE72_RS04740 (KTE72_04710) | rinB | 957432..957605 (+) | 174 | WP_025176537.1 | transcriptional activator RinB | - |
| KTE72_RS04745 (KTE72_04715) | - | 957606..957752 (+) | 147 | WP_000989998.1 | hypothetical protein | - |
| KTE72_RS04750 (KTE72_04720) | - | 957776..958198 (+) | 423 | WP_000162701.1 | RinA family phage transcriptional activator | - |
| KTE72_RS04755 (KTE72_04725) | - | 958529..959023 (+) | 495 | WP_000594088.1 | terminase small subunit | - |
| KTE72_RS04760 (KTE72_04730) | - | 959016..960239 (+) | 1224 | WP_001037578.1 | PBSX family phage terminase large subunit | - |
| KTE72_RS04765 (KTE72_04735) | - | 960236..961660 (+) | 1425 | WP_016187272.1 | phage portal protein | - |
| KTE72_RS04770 (KTE72_04740) | - | 961629..962579 (+) | 951 | WP_000184140.1 | phage head morphogenesis protein | - |
| KTE72_RS04775 (KTE72_04745) | - | 962583..962816 (+) | 234 | WP_000440857.1 | hypothetical protein | - |
| KTE72_RS04780 (KTE72_04750) | - | 962920..963504 (+) | 585 | WP_016187273.1 | DUF4355 domain-containing protein | - |
| KTE72_RS04785 (KTE72_04755) | - | 963521..964435 (+) | 915 | WP_016187274.1 | phage major capsid protein | - |
| KTE72_RS04790 (KTE72_04760) | - | 964447..964590 (+) | 144 | WP_000002930.1 | hypothetical protein | - |
| KTE72_RS04795 (KTE72_04765) | - | 964596..964946 (+) | 351 | WP_016187275.1 | hypothetical protein | - |
| KTE72_RS04800 (KTE72_04770) | - | 964958..965293 (+) | 336 | WP_021285837.1 | phage head closure protein | - |
| KTE72_RS04805 (KTE72_04775) | - | 965280..965687 (+) | 408 | WP_021285836.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| KTE72_RS04810 (KTE72_04780) | - | 965700..966125 (+) | 426 | WP_016187278.1 | DUF3168 domain-containing protein | - |
| KTE72_RS04815 (KTE72_04785) | - | 966126..966683 (+) | 558 | WP_000057585.1 | hypothetical protein | - |
| KTE72_RS04820 (KTE72_04790) | - | 966750..967262 (+) | 513 | WP_000134336.1 | tail assembly chaperone | - |
| KTE72_RS04825 | - | 967442..967591 (+) | 150 | WP_016187279.1 | hypothetical protein | - |
| KTE72_RS04830 (KTE72_04800) | - | 967595..970480 (+) | 2886 | WP_021285835.1 | terminase | - |
| KTE72_RS04835 (KTE72_04805) | - | 970495..971436 (+) | 942 | WP_021285834.1 | phage tail domain-containing protein | - |
| KTE72_RS04840 (KTE72_04810) | - | 971447..973333 (+) | 1887 | WP_016187282.1 | SGNH/GDSL hydrolase family protein | - |
| KTE72_RS04845 (KTE72_04815) | - | 973346..975244 (+) | 1899 | WP_016187283.1 | hypothetical protein | - |
| KTE72_RS04850 (KTE72_04820) | - | 975244..977067 (+) | 1824 | WP_016187284.1 | phage baseplate upper protein | - |
| KTE72_RS04855 (KTE72_04825) | - | 977067..977444 (+) | 378 | WP_016187285.1 | DUF2977 domain-containing protein | - |
| KTE72_RS04860 (KTE72_04830) | - | 977454..977627 (+) | 174 | WP_001800921.1 | XkdX family protein | - |
| KTE72_RS04865 (KTE72_04835) | - | 977668..977967 (+) | 300 | WP_021285833.1 | DUF2951 family protein | - |
| KTE72_RS04870 (KTE72_04840) | - | 978104..979978 (+) | 1875 | WP_016187457.1 | glucosaminidase domain-containing protein | - |
| KTE72_RS04875 (KTE72_04845) | - | 979991..980218 (+) | 228 | Protein_954 | BppU family phage baseplate upper protein | - |
| KTE72_RS04880 (KTE72_04850) | - | 980461..980715 (+) | 255 | WP_016187459.1 | phage holin | - |
| KTE72_RS04885 (KTE72_04855) | - | 980727..981482 (+) | 756 | WP_016187460.1 | CHAP domain-containing protein | - |
| KTE72_RS04890 (KTE72_04860) | - | 982126..982305 (+) | 180 | WP_000201920.1 | hypothetical protein | - |
| KTE72_RS04895 (KTE72_04865) | - | 982327..982854 (+) | 528 | WP_000455172.1 | Panacea domain-containing protein | - |
| KTE72_RS04900 (KTE72_04870) | - | 982844..983242 (+) | 399 | WP_000557464.1 | hypothetical protein | - |
| KTE72_RS04905 (KTE72_04875) | - | 983715..983827 (+) | 113 | Protein_960 | hypothetical protein | - |
| KTE72_RS04910 (KTE72_04880) | - | 983833..984147 (-) | 315 | WP_000274033.1 | hypothetical protein | - |
| KTE72_RS04915 (KTE72_04885) | - | 984516..985556 (+) | 1041 | WP_000582322.1 | hemolysin family protein | - |
| KTE72_RS04920 (KTE72_04890) | - | 985570..986637 (+) | 1068 | WP_000267231.1 | NAD(P)H-dependent flavin oxidoreductase | - |
| KTE72_RS04925 (KTE72_04895) | - | 986980..987828 (+) | 849 | WP_000608134.1 | DUF72 domain-containing protein | - |
| KTE72_RS04930 (KTE72_04900) | - | 987841..988668 (+) | 828 | WP_000927632.1 | sulfite exporter TauE/SafE family protein | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 16066.57 Da Isoelectric Point: 5.8724
>NTDB_id=582601 KTE72_RS04635 WP_016187439.1 949412..949840(+) (ssbA) [Staphylococcus aureus strain NL1]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQQNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQQNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
Nucleotide
Download Length: 429 bp
>NTDB_id=582601 KTE72_RS04635 WP_016187439.1 949412..949840(+) (ssbA) [Staphylococcus aureus strain NL1]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCGAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACCTCCCGTTCTGA
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCGAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACCTCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.721 |
100 |
0.711 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.62 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
74.648 |
0.437 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.657 |
100 |
0.43 |
| ssbA | Streptococcus mutans UA159 |
41.549 |
100 |
0.415 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.141 |
100 |
0.401 |