Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   VB13_RS00735 Genome accession   NZ_CP077685
Coordinates   113586..113981 (+) Length   131 a.a.
NCBI ID   WP_009881035.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain M49 591     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 108586..118981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VB13_RS00710 (VB13_00735) pepA 109335..110402 (-) 1068 WP_012560390.1 glutamyl aminopeptidase -
  VB13_RS00715 (VB13_00740) - 110898..112031 (-) 1134 WP_009880712.1 ISAs1-like element IS1548 family transposase -
  VB13_RS00720 (VB13_00745) - 112193..112477 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  VB13_RS00725 (VB13_00750) - 112474..112791 (+) 318 WP_002992751.1 thioredoxin family protein -
  VB13_RS00730 (VB13_00755) ytpR 112809..113453 (+) 645 WP_009881034.1 YtpR family tRNA-binding protein -
  VB13_RS00735 (VB13_00760) ssbA 113586..113981 (+) 396 WP_009881035.1 single-stranded DNA-binding protein Machinery gene
  VB13_RS00740 (VB13_00765) - 114241..114882 (-) 642 WP_002986504.1 deoxynucleoside kinase -
  VB13_RS00745 (VB13_00770) dusB 114902..115879 (-) 978 WP_002987812.1 tRNA dihydrouridine synthase DusB -
  VB13_RS00750 (VB13_00775) hslO 115866..116738 (-) 873 WP_009880351.1 Hsp33 family molecular chaperone HslO -
  VB13_RS00755 (VB13_00780) nra 116864..118399 (-) 1536 WP_009880350.1 transcriptional regulator Nra -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14757.87 Da        Isoelectric Point: 8.0157

>NTDB_id=582219 VB13_RS00735 WP_009881035.1 113586..113981(+) (ssbA) [Streptococcus pyogenes strain M49 591]
MYNKVTAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLISIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=582219 VB13_RS00735 WP_009881035.1 113586..113981(+) (ssbA) [Streptococcus pyogenes strain M49 591]
ATGTATAATAAAGTGACAGCAATCGGTCGTTTGGTAGCTAAGCCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCTGATTTTATTTCAGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATATCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

63.158

87.023

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397