Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JGX27_RS00780 Genome accession   NZ_CP077423
Coordinates   116569..116964 (+) Length   131 a.a.
NCBI ID   WP_009853250.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 111569..121964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS00740 (JGX27_00740) - 111714..112352 (+) 639 WP_009853241.1 type II CAAX endopeptidase family protein -
  JGX27_RS00745 (JGX27_00745) proC 112412..113182 (-) 771 WP_009853242.1 pyrroline-5-carboxylate reductase -
  JGX27_RS00750 (JGX27_00750) pepA 113243..114310 (-) 1068 WP_009853243.1 glutamyl aminopeptidase -
  JGX27_RS00755 (JGX27_00755) - 114428..114601 (+) 174 WP_012961333.1 hypothetical protein -
  JGX27_RS00760 (JGX27_00760) - 114589..114720 (+) 132 WP_009853245.1 DUF4651 domain-containing protein -
  JGX27_RS00765 (JGX27_00765) - 114713..115030 (+) 318 WP_009853246.1 thioredoxin family protein -
  JGX27_RS00770 (JGX27_00770) ytpR 115039..115665 (+) 627 WP_009853247.1 YtpR family tRNA-binding protein -
  JGX27_RS00775 (JGX27_00775) - 115752..116457 (-) 706 Protein_104 class I SAM-dependent methyltransferase -
  JGX27_RS00780 (JGX27_00780) ssbA 116569..116964 (+) 396 WP_009853250.1 single-stranded DNA-binding protein Machinery gene
  JGX27_RS00785 (JGX27_00785) - 117114..118157 (+) 1044 WP_009853251.1 YeeE/YedE family protein -
  JGX27_RS00790 (JGX27_00790) - 118160..118387 (+) 228 WP_009853252.1 sulfurtransferase TusA family protein -
  JGX27_RS00795 (JGX27_00795) - 118515..119315 (+) 801 WP_009853253.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14845.81 Da        Isoelectric Point: 5.7916

>NTDB_id=581486 JGX27_RS00780 WP_009853250.1 116569..116964(+) (ssbA) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MYNKVIIIGRLTAQPELVTTSNEKSVTRVTLAVNRRFKSQNGEREADFISVVVWGRLAETLVSYAGKGSLLSVDGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQRAMRENNVANDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=581486 JGX27_RS00780 WP_009853250.1 116569..116964(+) (ssbA) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATGTACAATAAAGTTATTATAATCGGGCGCTTGACAGCGCAGCCTGAGCTTGTGACGACGTCAAATGAAAAATCTGTTAC
ACGTGTAACACTAGCAGTCAACCGCCGTTTTAAATCACAAAATGGTGAGCGTGAGGCGGATTTTATTTCAGTTGTGGTTT
GGGGACGTTTGGCAGAAACTCTTGTTTCTTATGCTGGAAAAGGTAGTTTGCTTTCAGTAGATGGCGAGCTTCGCACACGC
AAATATGAAAAAGATGGTCACACGAATTATGTGACAGAAGTGCTTTGCCATTCTTTCCAACTTTTAGAAAGCCGTGCCCA
ACGTGCCATGCGAGAAAATAATGTGGCAAACGATCTCGCTGATTTAGTTTTAGAAGAGGAAGAATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

80.153

100

0.802
  ssbB Streptococcus sobrinus strain NIDR 6715-7

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae Rx1

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae D39

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae R6

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae TIGR4

77.099

100

0.771
  ssbB/cilA Streptococcus mitis SK321

76.336

100

0.763
  ssbB/cilA Streptococcus mitis NCTC 12261

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

46.154

89.313

0.412