Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6L88_RS00510 Genome accession   NZ_CP077404
Coordinates   97577..98071 (+) Length   164 a.a.
NCBI ID   WP_002261867.1    Uniprot ID   A0AAX1K2T1
Organism   Streptococcus mutans strain FDAARGOS 1458     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 92577..103071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L88_RS00485 (I6L88_00485) - 92937..93986 (+) 1050 WP_002280328.1 zinc-dependent alcohol dehydrogenase family protein -
  I6L88_RS00490 (I6L88_00490) mutY 94178..95323 (-) 1146 WP_002267522.1 A/G-specific adenine glycosylase -
  I6L88_RS00495 (I6L88_00495) - 96360..96563 (-) 204 WP_002280327.1 hypothetical protein -
  I6L88_RS00500 (I6L88_00500) - 96868..97113 (+) 246 WP_002263367.1 hypothetical protein -
  I6L88_RS00505 (I6L88_00505) rpsF 97269..97559 (+) 291 WP_002261866.1 30S ribosomal protein S6 -
  I6L88_RS00510 (I6L88_00510) ssbA 97577..98071 (+) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  I6L88_RS00515 (I6L88_00515) rpsR 98101..98340 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  I6L88_RS00520 (I6L88_00520) - 98659..99378 (+) 720 WP_002280414.1 TraX family protein -
  I6L88_RS00525 (I6L88_00525) hdrM 99386..100072 (-) 687 WP_002268420.1 hdrR negative regulator HdrM Regulator
  I6L88_RS00530 (I6L88_00530) hdrR 100069..100425 (-) 357 WP_002280415.1 LytTR family transcriptional regulator HdrR Regulator
  I6L88_RS00535 (I6L88_00535) - 100564..101226 (-) 663 WP_002265267.1 DUF1129 domain-containing protein -
  I6L88_RS00540 (I6L88_00540) - 101508..102452 (-) 945 WP_002262667.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18331.97 Da        Isoelectric Point: 4.7187

>NTDB_id=581285 I6L88_RS00510 WP_002261867.1 97577..98071(+) (ssbA) [Streptococcus mutans strain FDAARGOS 1458]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINIVIWRQQAENLANWAKKGTLLGITGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREGQSNSYNAGGNNNFGGNNFSSQGSSQSQTPNFARDESPFGDSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=581285 I6L88_RS00510 WP_002261867.1 97577..98071(+) (ssbA) [Streptococcus mutans strain FDAARGOS 1458]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACTCGTGATGCTGAGCTCCGTTACACCCCAAGTAATCAAGCTGTGGC
AACTTTTACCCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTCATTAATATCGTGATTT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAAGGGACTCTTTTAGGCATTACTGGTCGAATCCAGACCCGC
AATTATGAAAACCAACAAGGTCAGCGTGTTTACGTCACAGAAGTTGTTGCGGATAATTTCCAAATTTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAAACAGTTATAATGCTGGTGGTAACAATAACTTTGGCGGAAATAATTTTTCTTCCCAAGGTT
CTTCACAATCTCAAACGCCAAACTTTGCTAGAGATGAAAGTCCATTTGGTGATTCAAATCCTATGGATATTTCAGACGAT
GATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.062

100

0.616
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.591
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.261

72.561

0.372
  ssb Glaesserella parasuis strain SC1401

32.62

100

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.632

69.512

0.366
  ssbB/cilA Streptococcus mitis NCTC 12261

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae Rx1

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae D39

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae R6

50.42

72.561

0.366
  ssbB/cilA Streptococcus mitis SK321

50.42

72.561

0.366