Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6L37_RS06605 Genome accession   NZ_CP077399
Coordinates   1349431..1350672 (-) Length   413 a.a.
NCBI ID   WP_201980459.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1407     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1344431..1355672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L37_RS06580 (I6L37_06580) mutT 1346449..1346844 (+) 396 WP_216993567.1 8-oxo-dGTP diphosphatase MutT -
  I6L37_RS06585 (I6L37_06585) yacG 1346907..1347101 (-) 195 WP_026457308.1 DNA gyrase inhibitor YacG -
  I6L37_RS06590 (I6L37_06590) zapD 1347111..1347833 (-) 723 WP_201980463.1 cell division protein ZapD -
  I6L37_RS06595 (I6L37_06595) coaE 1347871..1348485 (-) 615 WP_216993568.1 dephospho-CoA kinase -
  I6L37_RS06600 (I6L37_06600) pilD 1348489..1349364 (-) 876 WP_216993569.1 A24 family peptidase Machinery gene
  I6L37_RS06605 (I6L37_06605) pilC 1349431..1350672 (-) 1242 WP_201980459.1 type II secretion system F family protein Machinery gene
  I6L37_RS06610 (I6L37_06610) pilB 1350894..1352600 (-) 1707 WP_216993570.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  I6L37_RS06615 (I6L37_06615) tapA 1352610..1353035 (-) 426 WP_124238858.1 type IVa pilus major pilin TapA -
  I6L37_RS06620 (I6L37_06620) nadC 1353422..1354279 (-) 858 WP_216993571.1 carboxylating nicotinate-nucleotide diphosphorylase -
  I6L37_RS06625 (I6L37_06625) - 1354283..1354753 (-) 471 WP_042025097.1 TIGR02281 family clan AA aspartic protease -
  I6L37_RS06630 (I6L37_06630) ampD 1354777..1355358 (+) 582 WP_216993572.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45359.47 Da        Isoelectric Point: 9.8389

>NTDB_id=581220 I6L37_RS06605 WP_201980459.1 1349431..1350672(-) (pilC) [Aeromonas sp. FDAARGOS 1407]
MATLTNKNNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVTKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGIVAADVETGTPMSEALRRHPRYFDALYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVFFGGAA
LAIFLYVRAWRASQKVRDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=581220 I6L37_RS06605 WP_201980459.1 1349431..1350672(-) (pilC) [Aeromonas sp. FDAARGOS 1407]
ATGGCAACGCTAACCAACAAGAATAATGCCCCCAAGAAAGTCTTCGCGTTTCGCTGGAGCGGGGTTAACCGCAAGGGCCA
GAAAGTTTCTGGCGAACTCCAGGCCGACAGCATCAATACCGTCAAGGCCGAGCTGCGCAAGCAGGGGGTCAATGTCACCA
AGGTGACCAAGAAATCCCAGGGGCTGTTCTCCAAAGGCGGCGCCAAGATCAAGCCGATGGATATCGCCATCGTCTCGCGC
CAGATCACCACCATGCTCTCCGCCGGTGTACCGCTGGTGCAGAGCCTGCAGATCATCGCCCGCAGCCATGAAAAAGCCTC
GATGCGCGAGCTGATGGGGATCGTCGCCGCCGATGTGGAGACTGGCACCCCCATGTCGGAGGCGCTGCGCCGCCATCCCC
GCTACTTTGATGCCCTCTACTGCGACCTAGTGGAGGCGGGCGAGCAGTCCGGCGCGCTGGAGACCATCTACGATCGCATC
GCCACCTATCGGGAAAAGTCGGAAGCGCTCAAGTCCAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATCGTCGTCACCTCCATCCTGCTGCTGTTCGTCATCCCCCAGTTCGAGGACATCTTCAAGAGCTTCGGCGCCGAGC
TGCCCATCTTCACCCAGTTCGTCATCGGCATCTCCCGCTTCATGCAGAACTGGTGGTATGTCTTCTTCGGCGGAGCGGCG
CTCGCCATCTTCCTCTACGTCCGCGCCTGGCGCGCCTCTCAAAAGGTAAGAGACAACACCGACAAGTTTGTGCTGACCAT
CCCGGTGGTCGGCATGATATTGCACAAGGCGGCCATGGCCCGCTTTGCCCGCACCCTCTCGACCACCTTCTCAGCCGGTA
TCCCACTGGTGGATGCACTCATCTCGGCGGCGGGGGCCTCCGGCAACTATGTCTATCGCACCGCAGTCATGGCCATTCGT
AACGAGGTAGTAGCGGGCATGCAAATCAACGTGGCGATGCGCACCGTGGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGCGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTGGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGCATGGTGATCGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGATGTCGTGGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.828

95.884

0.554
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

53.634

96.61

0.518
  pilC Legionella pneumophila strain ERS1305867

50.614

98.547

0.499
  pilC Vibrio cholerae strain A1552

47.118

96.61

0.455
  pilC Vibrio campbellii strain DS40M4

46.734

96.368

0.45
  pilG Neisseria gonorrhoeae MS11

40.05

97.337

0.39
  pilG Neisseria meningitidis 44/76-A

39.801

97.337

0.387
  pilC Thermus thermophilus HB27

38.5

96.852

0.373