Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   I6L37_RS06610 Genome accession   NZ_CP077399
Coordinates   1350894..1352600 (-) Length   568 a.a.
NCBI ID   WP_216993570.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1407     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1345894..1357600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L37_RS06580 (I6L37_06580) mutT 1346449..1346844 (+) 396 WP_216993567.1 8-oxo-dGTP diphosphatase MutT -
  I6L37_RS06585 (I6L37_06585) yacG 1346907..1347101 (-) 195 WP_026457308.1 DNA gyrase inhibitor YacG -
  I6L37_RS06590 (I6L37_06590) zapD 1347111..1347833 (-) 723 WP_201980463.1 cell division protein ZapD -
  I6L37_RS06595 (I6L37_06595) coaE 1347871..1348485 (-) 615 WP_216993568.1 dephospho-CoA kinase -
  I6L37_RS06600 (I6L37_06600) pilD 1348489..1349364 (-) 876 WP_216993569.1 A24 family peptidase Machinery gene
  I6L37_RS06605 (I6L37_06605) pilC 1349431..1350672 (-) 1242 WP_201980459.1 type II secretion system F family protein Machinery gene
  I6L37_RS06610 (I6L37_06610) pilB 1350894..1352600 (-) 1707 WP_216993570.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  I6L37_RS06615 (I6L37_06615) tapA 1352610..1353035 (-) 426 WP_124238858.1 type IVa pilus major pilin TapA -
  I6L37_RS06620 (I6L37_06620) nadC 1353422..1354279 (-) 858 WP_216993571.1 carboxylating nicotinate-nucleotide diphosphorylase -
  I6L37_RS06625 (I6L37_06625) - 1354283..1354753 (-) 471 WP_042025097.1 TIGR02281 family clan AA aspartic protease -
  I6L37_RS06630 (I6L37_06630) ampD 1354777..1355358 (+) 582 WP_216993572.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  I6L37_RS06635 (I6L37_06635) pdhR 1355625..1356389 (+) 765 WP_026456603.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 62549.96 Da        Isoelectric Point: 5.5619

>NTDB_id=581221 I6L37_RS06610 WP_216993570.1 1350894..1352600(-) (pilB) [Aeromonas sp. FDAARGOS 1407]
MTSSPHSGLAISLAASSLISEEDSQRYLSQAKAQRKPFVAFLVENQILDSKALADFCELEYGVPLLDLAAFDLAEIPQKY
LNQKLIEKHHVLPIYTQGHTLYIAMSDPTNVSALEDFGFSFGLHTEALLVEENKLTTAIGKLLENETDVLGMEDIDESEI
SDLEVSDEGSRLDESVNTTDDDAPIVKYINKILMDAIKRGASDLHFEPYEQKYRIRFRIDGILHEIATPPVNLANRFSAR
LKVMARLDIAERRLPQDGRIKLKLSRNKSMDMRVNTLPTMWGEKIVIRLLDSSAARLNIEQLGFDDRQKAQYLRALSKPQ
GMILVTGPTGSGKTVSLYTGLNILNTTEVNISTAEDPVEINLPGVNQVQVNPKAGLTFASALRSFLRQDPDVVMVGEIRD
LETAEIAIKAAQTGHLVLSTLHTNSAAETLTRMMNMGVPAFNIASSVTLIMAQRLARKLCDHCKAPEVVPEAELLELGFT
PQQLAAGLRLFKPIGCKECSGGYKGRVGIYEIMLMSENIAKLIMQGANSLQIAAIAQKEGMRTLRTSGLEKARLGVTSLA
EVNRVTTN

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=581221 I6L37_RS06610 WP_216993570.1 1350894..1352600(-) (pilB) [Aeromonas sp. FDAARGOS 1407]
ATGACCTCTAGCCCCCATAGCGGCCTGGCGATAAGCCTGGCCGCCTCTTCGTTGATCAGCGAAGAGGATTCCCAGCGCTA
CCTGAGTCAGGCCAAGGCCCAGCGCAAACCCTTCGTGGCGTTTCTGGTGGAAAACCAGATCCTCGACAGCAAGGCGTTGG
CCGATTTCTGCGAGCTGGAGTATGGGGTACCTCTGCTGGATCTTGCCGCCTTCGACCTGGCCGAGATCCCGCAGAAGTAC
CTCAATCAGAAGCTGATTGAGAAACATCATGTGCTGCCCATCTACACCCAGGGCCACACCCTCTATATCGCCATGTCGGA
TCCGACCAATGTGTCGGCACTGGAAGATTTCGGCTTCAGCTTCGGGCTCCATACCGAGGCGCTGCTGGTGGAAGAAAACA
AGCTCACCACCGCCATCGGCAAGCTGCTGGAAAACGAAACCGATGTCCTCGGCATGGAGGATATCGACGAATCTGAAATC
TCGGATCTCGAGGTCTCTGACGAGGGCAGTCGCCTCGACGAGAGCGTCAACACCACGGACGATGACGCCCCCATCGTCAA
GTACATCAACAAGATCCTGATGGATGCCATCAAGCGCGGCGCCTCCGACCTGCACTTCGAGCCCTATGAGCAGAAGTACC
GCATCCGCTTTCGCATTGACGGCATCCTGCACGAAATTGCCACACCACCGGTCAATCTGGCCAACCGCTTCTCGGCCCGC
CTCAAGGTGATGGCACGGCTCGATATCGCCGAACGGCGCCTGCCCCAGGATGGCCGCATCAAGCTGAAGCTGTCACGCAA
CAAGTCGATGGACATGCGAGTCAACACCCTGCCCACCATGTGGGGAGAGAAGATCGTTATCCGTCTGCTGGACTCCTCGG
CGGCGCGGCTCAATATCGAGCAGCTCGGCTTTGACGATCGGCAGAAAGCGCAATACCTGCGCGCCCTCTCCAAGCCCCAG
GGGATGATACTGGTGACCGGCCCCACCGGCTCGGGCAAGACGGTCTCGCTTTACACTGGCCTCAACATTCTCAACACCAC
AGAGGTGAATATCTCTACCGCCGAGGATCCGGTGGAGATCAACCTGCCCGGCGTCAACCAGGTGCAGGTCAATCCCAAGG
CAGGCCTCACCTTCGCCAGCGCACTGCGCTCCTTCCTGCGTCAGGATCCTGATGTGGTGATGGTCGGGGAAATACGGGAC
TTGGAAACCGCCGAGATCGCCATCAAGGCGGCGCAAACCGGCCACCTGGTACTCTCCACCCTGCATACCAACTCGGCGGC
CGAGACCCTGACCCGGATGATGAACATGGGGGTGCCCGCCTTCAACATCGCCTCCTCGGTGACCCTGATCATGGCCCAGC
GGCTGGCCCGCAAGCTGTGCGATCACTGCAAGGCGCCCGAAGTGGTGCCTGAAGCCGAGTTGCTGGAGCTGGGCTTTACC
CCGCAGCAACTGGCGGCGGGGCTGAGGCTGTTCAAGCCGATAGGTTGCAAGGAGTGCTCGGGCGGCTACAAGGGACGGGT
CGGCATCTACGAAATCATGCTGATGTCGGAAAATATCGCAAAATTGATCATGCAGGGAGCCAACTCGCTGCAGATCGCCG
CCATCGCCCAGAAAGAGGGGATGCGGACCCTGCGCACCTCCGGGTTGGAAAAGGCACGCCTGGGTGTCACCAGTCTGGCG
GAAGTGAACCGGGTCACCACCAACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(42-146)

Type II/IV secretion system protein (T2SSE)

(191-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

56.239

100

0.563
  pilB Acinetobacter baylyi ADP1

55.634

100

0.556
  pilB Legionella pneumophila strain ERS1305867

56.642

95.423

0.54
  pilB Vibrio cholerae strain A1552

53.996

99.12

0.535
  pilB Vibrio parahaemolyticus RIMD 2210633

51.596

99.296

0.512
  pilB Vibrio campbellii strain DS40M4

50.348

100

0.509
  pilF Neisseria gonorrhoeae MS11

46.809

99.296

0.465
  pilB/pilB1 Synechocystis sp. PCC 6803

38.062

100

0.387
  pilF Thermus thermophilus HB27

40.341

92.958

0.375