NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	I6L37_RS06600	Genome accession	NZ_CP077399
Coordinates	1348489..1349364 (-)	Length	291 a.a.
NCBI ID	WP_216993569.1	Uniprot ID	-
Organism	Aeromonas sp. FDAARGOS 1407
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1343489..1354364

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6L37_RS06575 (I6L37_06575)	secA	1343638..1346358 (+)	2721	WP_124238853.1	preprotein translocase subunit SecA	-
I6L37_RS06580 (I6L37_06580)	mutT	1346449..1346844 (+)	396	WP_216993567.1	8-oxo-dGTP diphosphatase MutT	-
I6L37_RS06585 (I6L37_06585)	yacG	1346907..1347101 (-)	195	WP_026457308.1	DNA gyrase inhibitor YacG	-
I6L37_RS06590 (I6L37_06590)	zapD	1347111..1347833 (-)	723	WP_201980463.1	cell division protein ZapD	-
I6L37_RS06595 (I6L37_06595)	coaE	1347871..1348485 (-)	615	WP_216993568.1	dephospho-CoA kinase	-
I6L37_RS06600 (I6L37_06600)	pilD	1348489..1349364 (-)	876	WP_216993569.1	A24 family peptidase	Machinery gene
I6L37_RS06605 (I6L37_06605)	pilC	1349431..1350672 (-)	1242	WP_201980459.1	type II secretion system F family protein	Machinery gene
I6L37_RS06610 (I6L37_06610)	pilB	1350894..1352600 (-)	1707	WP_216993570.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
I6L37_RS06615 (I6L37_06615)	tapA	1352610..1353035 (-)	426	WP_124238858.1	type IVa pilus major pilin TapA	-
I6L37_RS06620 (I6L37_06620)	nadC	1353422..1354279 (-)	858	WP_216993571.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 291 a.a. Molecular weight: 32359.60 Da Isoelectric Point: 6.5965

                                >NTDB_id=581219 I6L37_RS06600 WP_216993569.1 1348489..1349364(-) (pilD) [Aeromonas sp. FDAARGOS 1407]

MTLLIELAHGLPWLYLSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYHGYFETQTPNNESAERYNLMVPRSACPHCGH

AITAVENIPLLSWLWLRGRCRECQAPISARYPLVELLTALLSVAVATTLTPGWGVLAALLLTWVLVALTFIDLDKMLLPD

QLTLPLLWGGLLFNLLGGFVPLADAVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPIILLLSS

LVGAIIGITLIALRKHHQGNPIPFGPYLAIAGWIALLWGDTITRWYLEMVL

Nucleotide

Download Length: 876 bp

                                >NTDB_id=581219 I6L37_RS06600 WP_216993569.1 1348489..1349364(-) (pilD) [Aeromonas sp. FDAARGOS 1407]

ATGACACTTCTTATCGAGCTGGCGCACGGCTTGCCCTGGCTCTATCTCTCCCTGGTTTTTCTCTTCTCTCTGATGATCGG

CAGCTTCCTCAACGTGGTGATCCACCGCCTCCCCATCATGTTGGAGCGGGAGTGGCAGGCCGAGTATCACGGCTACTTCG

AGACACAAACGCCAAACAACGAGTCGGCTGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCCCACTGCGGCCAT

GCCATCACGGCCGTCGAGAATATCCCGCTCCTGAGCTGGCTCTGGCTCAGGGGTCGCTGCCGGGAGTGCCAAGCCCCCAT

CTCGGCCCGTTATCCCCTAGTGGAATTGCTGACTGCCCTGCTCTCGGTGGCGGTAGCCACGACCCTGACCCCGGGCTGGG

GGGTATTGGCAGCCCTGCTGCTGACCTGGGTGCTGGTGGCGCTCACTTTTATCGATCTGGACAAGATGCTGCTGCCCGAC

CAGCTTACCCTGCCGCTGCTGTGGGGCGGGTTGCTGTTCAATCTGCTGGGTGGCTTTGTACCACTGGCCGACGCGGTGGT

CGGGGCCATGGCCGGCTATCTGGTGCTGTGGAGCCTCTACTGGGCTTTCAAGCTGCTGACCGGCAAGGAGGGGATGGGTT

ATGGCGACTTCAAGCTACTGGCGGCACTCGGTGCCTGGCTGGGCTGGCAGTCGCTGCCCATCATACTGCTGCTCTCCTCC

CTGGTGGGCGCCATCATTGGCATCACGCTGATCGCGCTGCGCAAGCACCATCAGGGCAACCCCATCCCCTTTGGCCCCTA

TCTGGCCATCGCGGGCTGGATCGCCCTGCTGTGGGGCGATACCATCACCCGCTGGTATCTCGAAATGGTGCTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(140-248)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	61.458	98.969	0.608
pilD	Vibrio campbellii strain DS40M4	55.556	98.969	0.55
pilD	Acinetobacter baumannii D1279779	53.763	95.876	0.515
pilD	Acinetobacter nosocomialis M2	53.763	95.876	0.515
pilD	Neisseria gonorrhoeae MS11	49.438	91.753	0.454

Detailed information NTG0581219