Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6L39_RS03960 Genome accession   NZ_CP077395
Coordinates   840399..841640 (+) Length   413 a.a.
NCBI ID   WP_209794187.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1409     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 835399..846640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L39_RS03935 (I6L39_03935) ampD 835738..836307 (-) 570 WP_216991093.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  I6L39_RS03940 (I6L39_03940) - 836420..836890 (+) 471 WP_042077632.1 TIGR02281 family clan AA aspartic protease -
  I6L39_RS03945 (I6L39_03945) nadC 836894..837769 (+) 876 WP_216991094.1 carboxylating nicotinate-nucleotide diphosphorylase -
  I6L39_RS03950 (I6L39_03950) tapA 838079..838561 (+) 483 WP_216991095.1 type IVa pilus major pilin TapA -
  I6L39_RS03955 (I6L39_03955) pilB 838565..840271 (+) 1707 WP_042077628.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  I6L39_RS03960 (I6L39_03960) pilC 840399..841640 (+) 1242 WP_209794187.1 type II secretion system F family protein Machinery gene
  I6L39_RS03965 (I6L39_03965) pilD 841708..842583 (+) 876 WP_042077625.1 A24 family peptidase Machinery gene
  I6L39_RS03970 (I6L39_03970) coaE 842602..843216 (+) 615 WP_042077623.1 dephospho-CoA kinase -
  I6L39_RS03975 (I6L39_03975) zapD 843254..843976 (+) 723 WP_042077622.1 cell division protein ZapD -
  I6L39_RS03980 (I6L39_03980) yacG 843989..844183 (+) 195 WP_042077620.1 DNA gyrase inhibitor YacG -
  I6L39_RS03985 (I6L39_03985) mutT 844242..844646 (-) 405 WP_174213873.1 8-oxo-dGTP diphosphatase MutT -
  I6L39_RS03990 (I6L39_03990) - 844655..845839 (-) 1185 WP_042077618.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45484.44 Da        Isoelectric Point: 9.8675

>NTDB_id=581137 I6L39_RS03960 WP_209794187.1 840399..841640(+) (pilC) [Aeromonas sp. FDAARGOS 1409]
MATLAQKQNAPKKVFSFRWHGFNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKQGQGLFSKGGARIKPMDIAVISR
QITTMLSAGVPLVQSLQIIARGHEKAAVRELIGQIAADVETGTPLSEALHRHPRYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKNEALKSKIKKAMFYPAMVILVAIVVTSILLLFVIPQFEEIFRSFGAELPAFTRFVIGISRFMQSWWYVIFGGLA
LAIFLYVRAWRKSQKVRDSTDRFILTIPVVGNILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAIMAIR
NEVVAGMQINVAMRTVDLFPDMVTQMVMIGEESGAIDDMLSKVAAIFEQEVDDMVDGLTSLLEPIIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=581137 I6L39_RS03960 WP_209794187.1 840399..841640(+) (pilC) [Aeromonas sp. FDAARGOS 1409]
ATGGCTACATTAGCTCAAAAACAGAACGCACCAAAAAAGGTCTTCTCCTTCCGCTGGCACGGGTTCAATCGCAAGGGACA
GAAGGTGTCCGGCGAGTTGCAGGCCGACAGCATCAATACCGTCAAGGCGGAACTGCGCAAGCAGGGCGTCAATGTCACCA
AGGTCAGCAAGCAGGGACAGGGGCTGTTCTCCAAGGGCGGCGCCCGGATCAAGCCGATGGACATCGCCGTCATCTCCCGC
CAGATCACCACCATGCTCTCCGCCGGCGTACCCCTGGTACAGAGCCTGCAGATCATCGCACGCGGCCATGAAAAGGCGGC
GGTGCGCGAACTGATCGGCCAGATCGCCGCCGACGTGGAGACAGGTACCCCGCTGTCCGAGGCGTTGCACCGTCACCCCC
GTTACTTCGACGATCTCTATTGCGACCTGGTCGAGGCCGGAGAGCAGTCCGGCGCACTGGAAACCATCTACGACCGGATT
GCCACCTATCGCGAGAAGAACGAGGCCCTCAAATCCAAGATCAAGAAGGCCATGTTCTATCCGGCCATGGTCATCCTGGT
GGCCATCGTCGTCACCTCCATCCTGCTGCTGTTCGTCATCCCCCAGTTCGAGGAGATCTTCCGGAGCTTCGGGGCCGAGC
TGCCCGCCTTCACCCGGTTCGTCATCGGCATCTCCCGCTTCATGCAGTCGTGGTGGTATGTCATCTTTGGCGGCCTCGCC
CTCGCCATCTTCCTCTACGTGCGCGCCTGGCGAAAGTCCCAGAAGGTCAGGGACAGCACAGACAGGTTCATCCTCACCAT
TCCCGTGGTGGGCAACATACTGCACAAGGCCGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTCTCCGCCGGTA
TCCCCCTGGTGGATGCGCTGGTCTCGGCGGCCGGGGCGTCGGGCAACTATGTCTATCGCACCGCCATCATGGCCATCCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTCGCCATGCGCACCGTGGATCTCTTCCCCGACATGGTGACCCAGATGGT
GATGATCGGCGAGGAGTCCGGCGCCATCGATGACATGCTTTCCAAGGTCGCGGCCATCTTCGAACAGGAGGTGGACGACA
TGGTCGACGGCCTCACCAGCCTGCTGGAACCCATCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGCATGGTCGTGGCC
ATGTACCTCCCCATCTTCAAGCTCGGCTCTGTGATACACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.071

95.884

0.547
  pilC Legionella pneumophila strain ERS1305867

52.593

98.063

0.516
  pilC Acinetobacter baumannii D1279779

51.122

97.094

0.496
  pilC Acinetobacter baylyi ADP1

50.63

96.126

0.487
  pilC Vibrio cholerae strain A1552

46.814

98.789

0.462
  pilC Vibrio campbellii strain DS40M4

45.865

96.61

0.443
  pilG Neisseria meningitidis 44/76-A

40.796

97.337

0.397
  pilG Neisseria gonorrhoeae MS11

40.796

97.337

0.397
  pilC Thermus thermophilus HB27

38.5

96.852

0.373